| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1198 |
|---|
| Symbol | |
|---|
| ID | 6115433 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 1530784 |
|---|
| End bp | 1531389 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641632682 |
|---|
| Product | transcriptional regulator BetI |
|---|
| Protein accession | YP_001759586 |
|---|
| Protein GI | 170725560 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR03384] transcriptional repressor BetI |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000245724 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGCC CGCCAATGAA AACCGTCCGA CAACAACAGC TCATCGACGC CACCTTAGTC
TCTGTTGAAC GCCACGGTTT ACACAACACA ACCATCAATA CAATAAGTGG GTTGGCAGGG
TTATCATCTG GTTTGATTAG CCATTATTTC GGTGGCAAAC AGGGGTTGAT TGAAGCAACG
CAGAAATACC TTTTAGAGCA GCTCAAACAA GCTCTGTTAA GTCGCACATC CGGTAAAACC
TTAACACCAC TTGAGCGCTT ACATGCCATT GTTGAAGCTA ACTTTACCGA GCTGCAACGT
TCAAGACCCG CAACAAAAAC CTGGCTATGC TTCTGGTCAC AAGCTATGCA TGAACAAGGA
CTGGCCAGAC TGCAACATAT CAACAACCAA CGCTTGTACA GCAACCTATT GTTCTCTTTT
AAAAAACTAC TTCCACAAGC AGAGGCCATC ACAGCAGCTA AACAGACTGC CGCCATGATT
GATGGTTTTT GGCTGCGTAG CGCACTCGAC GCCGCACCAG AAAAAGAGTT CGAACAGGCC
CAGATTCTAT GTAAAGCCTT TATCGAGGCA GTGATCATGT CGTACGGAGA AACCCGATGT
CACTAG
|
|---|
| Protein sequence | MPRPPMKTVR QQQLIDATLV SVERHGLHNT TINTISGLAG LSSGLISHYF GGKQGLIEAT
QKYLLEQLKQ ALLSRTSGKT LTPLERLHAI VEANFTELQR SRPATKTWLC FWSQAMHEQG
LARLQHINNQ RLYSNLLFSF KKLLPQAEAI TAAKQTAAMI DGFWLRSALD AAPEKEFEQA
QILCKAFIEA VIMSYGETRC H
|
|---|
| |