| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1196 |
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| Symbol | |
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| ID | 6115431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 1527623 |
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| End bp | 1529320 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641632680 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001759584 |
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| Protein GI | 170725558 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000414657 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCCAAT CCACAACTGA TTATGATTAC ATTATTGTTG GCGCAGGCAG CGCAGGCTGC
GTGTTAGCAA ACCGATTATC AAAGGACCCA AGCAACAAGG TATTGCTGCT CGAAACCGGT
GGCAGTGATA AGAGCATCTT TATTCAGATG CCAACGGCGC TCTCAATTCC AATGAACACC
AAGAAATACG CTTGGCAGTT TGAAACCCAA GCTGAGCCCT ATCTTGATAA CCGCCGTATG
CACTGCCCAC GAGGCAAAGT GCTCGGTGGC TCATCATCGA TCAACGGCAT GGTCTATGTC
CGTGGTCATG CCCGTGATTT TGATGAGTGG CAACAAGAGG GAGCCAAAGA TTGGGATTAT
GCCCACTGCC TGCCCTACTT CAAAAAAGCG GAAAGCTGGG CCTTTGGCGA AGATGAATAT
CGTGGCGTTG ATGGTCCATT AGGCGTTAAT AACGGCAACA ATATGAAAAA CCCGCTCTAT
CAGGCGTTTG TTGATGCAGG TGTTGATGCG GGATATCTAG CGACAAACGA CTATAACGGC
GCGCAGCAAG AGGGCTTTGG CCCGATGCAC ATGACAGTTA AAAACGGCGT GCGCTGGTCA
AGCTCAAACG CCTATCTAAG ACCTGCAATG AAGCGCGACA ACCTCACGGT TATCACCCAT
GCCTTAGTGC ACAAGGTACT ATTTAGTACC AACGAAGGTG AGGGTAAAAA AGCAGTTGGT
GTTCGTTTTG AGCGTAAAGG CCAGCATATT GAAGTAAGCG CCAGTAAAGA GGTTGTGCTA
TCAGCAGGCT CCATCGGCTC ACCACATATA TTGCAACTCT CAGGTATCGG TGCAGCTCAA
ACACTCGCTG ATGCAGGCAT AGAGCAGGTA CACGAGCTGC CGGGCGTAGG TGAGAACTTA
CAAGACCATC TCGAATTCTA TTTTCAGTTT AAGTGCCTTA AGCCCATATC GCTCAACGGC
AAGCTTGATC CGTTAAACAA GCTGTTTATC GGCACCCGCT GGATACTCAA TAAATCAGGT
CTTGGAGCCA CCAACCATTT TGAATCCTGT GGCTTTATTC GCTCTAAAGC GGGACTTGAG
TGGCCAGATC TTCAGTACCA CTTCCTACCA GCGGCGATGC GTTACGATGG CAAAGAGGCC
TTTGCAGGCC ATGGTTTTCA GGTGCATATC GGCCATAACA AACCTAAGAG TCGCGGCAGT
GTAAAAGTGG TGTCAAATGA TCCCCACACC CCGCCCAATA TTCTCTTTAA CTACCTATCA
CACAGTGATG ATATCGAAGG GTTTCGCGCT TGCGTTCGCC TGACACGAGA GATTATCAAT
CAGCCAGCAC TGGATCAGTA CCGCGGTGAA GAGATCCAAC CGGGCATCAG TGTGCAAACC
GATGAAGAGA TAGACAGTTT TGTCAGACGC AGCGTAGAGA GTGCCTATCA TCCCTCCTGC
TCATGCAAGA TGGGCGAAGA TGCGATGGCA GTGGTTGACT CACAAACGCG AGTGCATGGT
CTACAGGGAC TTAGAGTGGT TGACTCCTCT ATTTTTCCGA CCATTCCCAA TGGCAACCTT
AATTCACCGA CCATCATGTT AGCCGAGCGA GCTGCCGATC TGATTTTAGG TAACACACCA
TTAGCGCCAA GTGCTGCCTC AGTCACCATT AGCAATAACT GGCAGACTCA ACAAAGGCAT
AGCTCAGCAG CAAGATAA
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| Protein sequence | MTQSTTDYDY IIVGAGSAGC VLANRLSKDP SNKVLLLETG GSDKSIFIQM PTALSIPMNT
KKYAWQFETQ AEPYLDNRRM HCPRGKVLGG SSSINGMVYV RGHARDFDEW QQEGAKDWDY
AHCLPYFKKA ESWAFGEDEY RGVDGPLGVN NGNNMKNPLY QAFVDAGVDA GYLATNDYNG
AQQEGFGPMH MTVKNGVRWS SSNAYLRPAM KRDNLTVITH ALVHKVLFST NEGEGKKAVG
VRFERKGQHI EVSASKEVVL SAGSIGSPHI LQLSGIGAAQ TLADAGIEQV HELPGVGENL
QDHLEFYFQF KCLKPISLNG KLDPLNKLFI GTRWILNKSG LGATNHFESC GFIRSKAGLE
WPDLQYHFLP AAMRYDGKEA FAGHGFQVHI GHNKPKSRGS VKVVSNDPHT PPNILFNYLS
HSDDIEGFRA CVRLTREIIN QPALDQYRGE EIQPGISVQT DEEIDSFVRR SVESAYHPSC
SCKMGEDAMA VVDSQTRVHG LQGLRVVDSS IFPTIPNGNL NSPTIMLAER AADLILGNTP
LAPSAASVTI SNNWQTQQRH SSAAR
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