| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1153 |
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| Symbol | |
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| ID | 6115388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 1486161 |
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| End bp | 1487996 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641632637 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_001759541 |
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| Protein GI | 170725515 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000483168 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0896301 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGCAAA CTCCTCAGTC GCAACTTAAA TTGTTGCTTG CCAAAGGTAA AGAGCAAGGT
TACTTAACCT ATGCAGAAGT GAACGATCAC TTGCCTGCAG ATATGGTCGA TGCTGATCAG
ATCGAAGATA TTGTCCAGAT GATCAACGAC ATGGGTATTC GCGTCTATGA ACAGGCGCCG
GATGCTGATG AGATGATGAT GTCTGAAGAC AGCACCGATG ATGATGCTGC TGAAGAAGCT
GCTGCTGCAC TTGCAACAGT AGAGGCCGAG CTAGGCCGTA CAACTGACCC AGTTCGTATG
TATATGCGTG AGATGGGTAC TGTTGAACTT CTTACCCGTG AAGGCGAGAT TGTTATCGCT
AAGCGTATTG AAGAGGGGAT CAACACAGTT CAGGCATCGG TTGCTGAATA CCCACAAGCG
ATCGCGATGA TCCTTGAGCA GTATGACCGC TACGAAGCTG AAGAGATCCG CCTATCGGAC
ATTATCTCAG GTTTTGTTGA CCCAAATGCT GAAGATGTTG CGCCAACAGC TACCCACGTC
GGTTCAGAAC TTTCAGATGA AGATCTGGAC GATGAAGATG ATGAAGATAG CGAAGATGAT
GAAGATGAAG AGGAAGGCCC AAAAGGTCCA GATCCTGAAG AAGCGAAAGA GCGCTTTACT
CAACTTCGTG AAGCTCATGA GAACACACTT AGAGTTATCA ACCTAAAAGG CCGTGGACAC
CCAGAGTCTA CCTTAGCTCT TTTTGAGATC GGTGAGATTT TCAAAGAGTT CCGCTTAATG
CCTAAGCAGT TTGACCGCTT AGTGAAAAGC ATGCGCGCCA TGATGGACAG AGTGCGTGTT
CAAGAACGCC TCATCATGAA GCTGTGTGTT GAACAAGCTA AGATGCCGAA GAAAAACTTC
GTTAAAGGTT ATACCTCTGA CGAAAGCAGC ATCGCATGGT TTGATGAAGA ACTTGCATCG
AAAAAGCCTT ATGTTGAAGG TTTAGAGATG GTTGAGCCTG ATGTTCGACG TTGTCGTGCA
AAGCTTGATG CGATAGAAAA AGAGACTGGA CTTGCGATTG CGGCTATCAA AGATATCAAC
CGTCGTATGT CAATCGGTGA AGCTAAAGCT CGCCGTGCTA AGAAAGAGAT GGTTGAAGCT
AACTTACGTC TAGTTATCTC AATCGCCAAA AAGTACACCA ACCGTGGCCT ACAGTTCTTG
GATCTTATCC AGGAAGGTAA CATTGGTCTA ATGAAAGCGG TTGATAAGTT TGAATACCGT
CGTGGTTACA AGTTCTCGAC CTATGCAACT TGGTGGATCC GTCAGGCGAT CACTCGCTCA
ATTGCTGACC AAGCAAGAAC GATCCGTATT CCAGTGCACA TGATTGAGAC AATCAACAAG
CTAAACCGTA TCTCTCGTCA AATGCTACAA GAGATGGGTC GTGAGCCCTC TCCTGAAGAG
TTGGCAGAAC GCATGTTGAT GCCTGAAGAT AAGATCCGTA AGGTCCTTAA GATTGCTAAA
GAGCCAATCT CAATGGAAAC CCCTATCGGT GATGATGAAG ATTCGCACTT AGGTGATTTC
ATCGAAGATA CTACGCTTGA GCTACCTTTA GACTCAGCAA CAGGCGAAAG CTTGAAGAAC
GCTACTCACG AAGTCTTAGC AGGCCTAACG GCTCGTGAAG CTAAAGTACT GCGTATGCGT
TTTGGTATCG ACATGAACAC TGACCACACG CTTGAAGAGG TAGGTAAGCA GTTTGACGTA
ACACGTGAGC GTATTCGTCA GATTGAAGCT AAGGCGCTGC GTAAGCTACG TCACCCTTCT
CGCTCAGAGA TCTTAAAATC TTTCCTAGAC GAGTAG
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| Protein sequence | MEQTPQSQLK LLLAKGKEQG YLTYAEVNDH LPADMVDADQ IEDIVQMIND MGIRVYEQAP
DADEMMMSED STDDDAAEEA AAALATVEAE LGRTTDPVRM YMREMGTVEL LTREGEIVIA
KRIEEGINTV QASVAEYPQA IAMILEQYDR YEAEEIRLSD IISGFVDPNA EDVAPTATHV
GSELSDEDLD DEDDEDSEDD EDEEEGPKGP DPEEAKERFT QLREAHENTL RVINLKGRGH
PESTLALFEI GEIFKEFRLM PKQFDRLVKS MRAMMDRVRV QERLIMKLCV EQAKMPKKNF
VKGYTSDESS IAWFDEELAS KKPYVEGLEM VEPDVRRCRA KLDAIEKETG LAIAAIKDIN
RRMSIGEAKA RRAKKEMVEA NLRLVISIAK KYTNRGLQFL DLIQEGNIGL MKAVDKFEYR
RGYKFSTYAT WWIRQAITRS IADQARTIRI PVHMIETINK LNRISRQMLQ EMGREPSPEE
LAERMLMPED KIRKVLKIAK EPISMETPIG DDEDSHLGDF IEDTTLELPL DSATGESLKN
ATHEVLAGLT AREAKVLRMR FGIDMNTDHT LEEVGKQFDV TRERIRQIEA KALRKLRHPS
RSEILKSFLD E
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