Gene Swoo_1077 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1077 
Symbol 
ID6115311 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1396826 
End bp1397938 
Gene Length1113 bp 
Protein Length370 aa 
Translation table11 
GC content47% 
IMG OID641632560 
Productpermease YjgP/YjgQ family protein 
Protein accessionYP_001759465 
Protein GI170725439 
COG category[R] General function prediction only 
COG ID[COG0795] Predicted permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000191567 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATTGTAT TTAGATACCT GATTCGTGAA GTTTTAAAGG CACAAATTGC GGTACTTTTC 
GTGTTATTAG CTATTTTTAT TAGCCAACAC TTTGTTCGTG TACTTGCTAA TGCGTCGGAC
GGTGAATTTC CCGCTTCATT AGTGATGACC CTACTTGGAC TCAACCTACC TTACCTTGCA
GTTCTGGTAC TTCCTCTTAG TTTTTTCCTT GGTATTTTAA TGGCTCATGG GCGTATGTAC
GCCGAAAGTG AGATGGTTAT ATTGCACAGT GTTGGGGTCA GTGAGTGGTA TATCACTCGA
GTGACACTAT TGCTTGCAGT GATCAATATG CTGATCACTG GAGTATTAGC CGTTTACGTG
ACGCCATGGG CAGAGGAGAG ACAGAATCAG GTTTTAGAGC ACGCTCAATC TGAAGCGGGT
TTAGCTGCGA TCACTCAGGG GCGTTTCCAA ACCAGCCCCA ATGGCAGAGC CGTACTCTTT
GTTGAGCGTA TCGGTCGTGA CAATGAGTTA GATAAAGTGT TTGTTGCCCA GTTGCCCGAC
CCTGAAGCAG AGCAAGGTCA GAGTAATATC GTACTGGCCC AAGGCGGTAA GGTCATCGAA
GATGAAACTG GTGGTCAACG CTTACAACTA CGTGATGGTG TGCAGTATCA AGGAACGCCT
AAACAGGTCG ACTTCCAAGT GATTGAGTTT GGTGGCTATC AGATGCAGAT AAAGGAGCAG
GAGGTGAACG AGCGCCGCCG TAAACTTTCT GCCTTGCCAA TTGAAGAGTT AATGAAGCAG
GAGGGGCCAG AGAGCAAGGC TGAGTTCCAT TGGCGACTAG CTATCCCTCT ATCTATTCCC
TTGCTGACTC TCATCGCAGT GCCTATGGCT AGAGTCAATG TTCGTCAGGG TAAATTTGCT
AAGATGTTCC CTGCTATTTT GCTCTATCTT GGTTACTTTG GGTTGATGAT CGCGGGAAGA
AAAGCACTGG AGGACGGTAT CATTCCTGGG TATTTAGGCA TGTGGTGGAT CCACCTCTCG
GCACTTATCT TAGGGGGATT ACTCTTAGGT AAAGAGCGGC CATCCGGCGT TAAAATCACC
GGCTTATTTA AGCGTAAGCA GGTGACATCA TGA
 
Protein sequence
MIVFRYLIRE VLKAQIAVLF VLLAIFISQH FVRVLANASD GEFPASLVMT LLGLNLPYLA 
VLVLPLSFFL GILMAHGRMY AESEMVILHS VGVSEWYITR VTLLLAVINM LITGVLAVYV
TPWAEERQNQ VLEHAQSEAG LAAITQGRFQ TSPNGRAVLF VERIGRDNEL DKVFVAQLPD
PEAEQGQSNI VLAQGGKVIE DETGGQRLQL RDGVQYQGTP KQVDFQVIEF GGYQMQIKEQ
EVNERRRKLS ALPIEELMKQ EGPESKAEFH WRLAIPLSIP LLTLIAVPMA RVNVRQGKFA
KMFPAILLYL GYFGLMIAGR KALEDGIIPG YLGMWWIHLS ALILGGLLLG KERPSGVKIT
GLFKRKQVTS