| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1055 |
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| Symbol | |
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| ID | 6115289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 1370158 |
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| End bp | 1371954 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641632538 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001759443 |
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| Protein GI | 170725417 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCACAG ATTTAAAGAT CACCCATAAA TTTCCTGTTG TTATGATCTG TTTTGCGCTG
CTTTCAGCAT TAATCACAGC CTTTATCGCC TTTACCATCG CCAAGAATGA GATGACTAAC
TCGGCAGAAG ACAAACTGAG CTCGCTGTTA GAGTCTAGAG CCTCATCGCT AAATACCTAC
TTCTCTGTTA TCGAAAAAGA CCTCTACTTC CACGCTCAAA GTCCCCTTGT TATCTCAGCT
ATCAAAGAGT TTTCTCAAGC TTGGCTTGCC ATGGAGAGCG AGCAAACGAG GCAACTTCAA
GATACCTATA TTCACATGAA CCCCTTCTCG AATGAACAGA AAAGCGCACT GCACCGAGCC
GATAACGCTT CGCTCTATGA CAAGTACCAT AGCGAGTATC ACCCAGCATT TAGAAACCTA
GTTTCAACTC GGGAGTTTCA CGATCTCTTT CTGTTTAATA CCCAAGGAGA TCTTATCTAT
AGTGTCAAAA AAGAGGAGGA CTTTGCGACC AACCTACTGA CAGGTCCTTG GCGGGAAACT
CACTTAAGTC ACTTAATCAA GGAGCTCAAC GCACAACCAA AGATAAGTCA GCACCTTTTT
GCAGATTTTT CCCCTTATGA ACCAAGTCAT CAAGCTCCAG CCAGCTTTAT CGCATCACCG
GTATTTGATA GTAACCGCCG CTATATCGGC ATCATCGCAT TTCAGATGCC CCTCGCCCCA
CTGAACCGAG TCATGCAGGT AACTGCTGGT ATGGGAGAGA GCGGTGAGAC CTATCTTGTG
GGCCCAGATC TCTTGATGCG CAGCGACTCT CGCTTCTTTC AAGGCCGAAG TATACTCCAA
ACTCAGGTCG ACACCCCCTC GGTTCATCGT GCCCTTGCCG GAGAGTCCGG CAGTGCTCGA
ATAGAGGATT ACCGTGGTAT CTCTGTATTT TCAGCGTTTG CACCTGTCGA CTTTCTGGGA
ACCAGATGGG CCATTGTCGC CGAGATAGAC ACTAATGAGA TCTTATCTCC TGTCTATACC
ATGAGCCACT TTCTTATCTT AAGTGGCGTC ATTATTGCCA TCGTTATCTT CTTTCTCGGT
TATCTGTTGG CGGCCGACAT CTCACTGCCT ATCGTCGCCA TGACACATAT GATGACCCGC
CTGTCTCGTA ATGAGCTCAA TATCAATATC TCAGTCTCCG AGCGCAAAGA TGAAGTGGGT
AAGATGGCCA AAGCGATGGA AGTGTTTAAA AACAATGCTA TAGAGCGAGA TCAACTTCAG
AAAAAGCTCA ACCATATGGC CCACCATGAC ACCTTAACGG GTCTACCAAC CCGCGAGTAT
GCAGGTCAAC AGATGAAGGA GTACTTAAAA GCAGGACTTA AGAAAGGCAA CAAGCTGGTG
GTGATGTTTG CCGATCTAGA TAACTTCAAG AGCATCAATG ACACCTTAGG TCATCAAGCT
GGAGATCAAC TCTTAAAGGA GGTCGCAGTA AGGCTCTCCG AGGCAGTAAG GGAGGATGAC
ATTATAGCCA GAGTCGGCGG AGATGAGTTT GTCATCATAC TCCCCTATGT TAACGATCTC
AGTGTCATCG AGCATATCGC AAACAAGATG ATCGACTCGC TAGCCATTAA CTTCTTACTT
CAGGAGCAGT TCTGCCAAAT TGGCCTCAGC TTAGGTATAG CTGTTGCCCC TGATGACGGG
CTTGACGGCA CAGCTTTGAT TAATAAAGCT GATAAGGCTA TGTATCAAGC AAAACAGAGA
GGAAAGAATA ACTTCGTCTT CGCCAGTGAG CTTAAAGACC AGTGTCAAAC AGGCTAA
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| Protein sequence | MFTDLKITHK FPVVMICFAL LSALITAFIA FTIAKNEMTN SAEDKLSSLL ESRASSLNTY
FSVIEKDLYF HAQSPLVISA IKEFSQAWLA MESEQTRQLQ DTYIHMNPFS NEQKSALHRA
DNASLYDKYH SEYHPAFRNL VSTREFHDLF LFNTQGDLIY SVKKEEDFAT NLLTGPWRET
HLSHLIKELN AQPKISQHLF ADFSPYEPSH QAPASFIASP VFDSNRRYIG IIAFQMPLAP
LNRVMQVTAG MGESGETYLV GPDLLMRSDS RFFQGRSILQ TQVDTPSVHR ALAGESGSAR
IEDYRGISVF SAFAPVDFLG TRWAIVAEID TNEILSPVYT MSHFLILSGV IIAIVIFFLG
YLLAADISLP IVAMTHMMTR LSRNELNINI SVSERKDEVG KMAKAMEVFK NNAIERDQLQ
KKLNHMAHHD TLTGLPTREY AGQQMKEYLK AGLKKGNKLV VMFADLDNFK SINDTLGHQA
GDQLLKEVAV RLSEAVREDD IIARVGGDEF VIILPYVNDL SVIEHIANKM IDSLAINFLL
QEQFCQIGLS LGIAVAPDDG LDGTALINKA DKAMYQAKQR GKNNFVFASE LKDQCQTG
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