| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1051 |
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| Symbol | |
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| ID | 6115285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1362463 |
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| End bp | 1364478 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 641632534 |
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| Product | diguanylate phosphodiesterase |
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| Protein accession | YP_001759439 |
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| Protein GI | 170725413 |
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| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00410] PTS system, lactose/cellobiose family IIC component |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTGGGAG TGTGGCAGTC TTCTGAACGT ATCTTTTTAA TTACAGTAAA AGAGTCTTTT
GTTGCTCTGA TCCCATTTAT TGTTGTTAAT TCATCTCTCT CACTGATATT AGCACTCGTT
GATGCATGGA AACCCGTGTG GCAACAAAGT GAGAATTATA TTTGGTTTAG TCAGTTCAGT
GTCAATCTGC ATGCTTTTTT CCCATTTTTA GTGCTTTTAT CTCTCTCTAT TCACTTTGCT
AAATACCTTA ATTTATCCCC TGTAGTATTA GCCTCTCTCT CAATAGGCAC CTTGATCTCT
CTTCATGTTC ACCCAATTGA TACTATTGAA GTCTTTGATC ATTTCTCTGA AATGTTAACT
GATCCTTGGG CTGTCGTTAT TCCCATTTTT ATGGCCTATA CCTTAAAGAA AGTGACTTTT
ATTAAATCGC TAAACTTTAT TAAAACAAGT AATTTAAATG GCTACTTAAA ACTGCACCTG
AATCTGTTAG CTCCCATGGT GATCAGCTTT TTGATTGTCA CCCTGCTTAT TTTGGTTTCA
TCTTTCTTTT TTGAGTTTGT ATTCGACTTT ATTGTTTCTC ACCTTCAAGA AGCAGGAAAC
TATGGTTTTG TGTTGTTTAG AGTGGTTACC ACTCATCTAC TTTGGTGCGT CGGGGTTCAT
GGTGATATTG CCTTTCACCT ATTTATGGGA AGCGACCAAG GACTACAACA GGTTTTTCAA
AACTTAACTA TCGATCAATT TATGGATATT TTTATTTTGT TTGGTGGAAG CGGGGGGACA
ATGGCACTCA TTATTGCGAT ATTTATCTCC TCAAAAGATA ACGGGTCTTT GAATGTCGCT
AAAATAGCAC TACCTTTTTC ATTTTTTAAT ATAAATGAAA TCTTAATTTA CGGCCTCCCT
ATTACGTTTA ATCCTAAACT TATCATCCCA TTTGTTTTAC TGCCTTGTAT GAATATGCTC
CTTGGTTATT TTGCTATTTC ATGGGGACTA CTTACATTTA ATGGCCACTC AGTTGCGTGG
ATCACTCCAC CTTTATTAAA TGCCTATATT GCTAGTGAAA GTTTCACCGT GGTCGCTTTT
CAGGCTGGGC TGATCGGCTT AAATGTGATG CTTTACTTAC CATTTGTACG ACGTTTTGAA
GTGATCAATA CGGGCAACAG TATGTTTGAA AATGTTTTAG AACATAAAAT ACAGCTACAA
ACAGAATTTG CTCGAATATC TGAACTTAAT TATGTCCAGA AACAATCGGA AGAGTTAGCC
GCTGATAATA AACTACAGAA AACTATCCAA GAGGTGTTAA GCGGAGAGTT GCTCCTGCAT
TACCAACCCA AAATTTGTTT AGACACAGAT GAGGTTATCG GTTTTGAAGC ATTGTTGAGG
CTTAGAGTGG ACTCAGGGAA AGTTGTTGGC CCTTATTTTA TCAAGGAGTT TGATGATGCT
GGATTTGCCA ACTTAATCGA TAACTTTGTG ATAAAAACGG TATCTGAAGA CCTTTTAAAG
TGGCAGGCGG AAGGGTTTAA CCCAAAAGTG AGTATTAACT TAAATCCTAA TAATATTTTA
GAGAAGCAAA CACAAAACTT GCTAATCGAT ATGCTGGGTT CCATGGCTCA CAATGTTGAG
ATCGAACTGC TGGAATCTGC TTTTATGTTA GATCTGAAAC GGGTCGAAGA GACTATTGAT
CTATTAAGCA GCTATGGCTT CTCCTTTGTG TTGGATGATT TTGGTACTGG CTTTTCCAGT
CTTAGCTTAC TCAGTAAGAT TAGAGTCAAT GGAGTTAAGT TAGATAGGAG TATTCTCGAG
CATACGGTCG ATCCTAAGGG GCAAACTCTC TATAAGCACA CCTGTATGTT ATGTAAAAGT
TTAGGTTTTA ATCTGATTGC TGAGGGGGTC GAAACCAAAG AGGAGGCCGA TTTTGTCAAA
CAGGCTGGTG TTGATTGCAT ACAGGGGTGG CTATACGCAA AAGCGATGCC GATGCAGGAA
GCTAAAAAGT ATGCTCAATC GATAGATAAG CACTAA
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| Protein sequence | MLGVWQSSER IFLITVKESF VALIPFIVVN SSLSLILALV DAWKPVWQQS ENYIWFSQFS
VNLHAFFPFL VLLSLSIHFA KYLNLSPVVL ASLSIGTLIS LHVHPIDTIE VFDHFSEMLT
DPWAVVIPIF MAYTLKKVTF IKSLNFIKTS NLNGYLKLHL NLLAPMVISF LIVTLLILVS
SFFFEFVFDF IVSHLQEAGN YGFVLFRVVT THLLWCVGVH GDIAFHLFMG SDQGLQQVFQ
NLTIDQFMDI FILFGGSGGT MALIIAIFIS SKDNGSLNVA KIALPFSFFN INEILIYGLP
ITFNPKLIIP FVLLPCMNML LGYFAISWGL LTFNGHSVAW ITPPLLNAYI ASESFTVVAF
QAGLIGLNVM LYLPFVRRFE VINTGNSMFE NVLEHKIQLQ TEFARISELN YVQKQSEELA
ADNKLQKTIQ EVLSGELLLH YQPKICLDTD EVIGFEALLR LRVDSGKVVG PYFIKEFDDA
GFANLIDNFV IKTVSEDLLK WQAEGFNPKV SINLNPNNIL EKQTQNLLID MLGSMAHNVE
IELLESAFML DLKRVEETID LLSSYGFSFV LDDFGTGFSS LSLLSKIRVN GVKLDRSILE
HTVDPKGQTL YKHTCMLCKS LGFNLIAEGV ETKEEADFVK QAGVDCIQGW LYAKAMPMQE
AKKYAQSIDK H
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