Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1040 |
Symbol | |
ID | 6115274 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 1352784 |
End bp | 1355243 |
Gene Length | 2460 bp |
Protein Length | 819 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 641632523 |
Product | PAS/PAC sensor hybrid histidine kinase |
Protein accession | YP_001759428 |
Protein GI | 170725402 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0784] FOG: CheY-like receiver |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATAATC AAAATAAAAA ACAGTCAACA AATGTTACGT TCGCAGAGAG TAAGCTGCAT CGCTTATCTC ATGCGATTTG TGGAGCAGAT ATTGGCATTT GGGAGTTTAC GCCACACACG CAGGAGTGCT ACTTCTCACC TAAGCTAAAA AAGTTAATTG GTCTACCTAT TGATCACCCT CTCACCTTAA ATGAGTTGAG AGAAAGAACG AGTCACACTT ATCAGCATCA CTTTAATATC TTTGATTCAG AGAATCTCAC ATTAGGTACT CAATGTAATT TCGATTTTAA GATTAAGATT GCGGAGACTG AACGCTGGTT TGAGTTAAGG AGTGAGGTTT TCCTCAATGA AGAGAATCAA TGCACGATAA CAGGCTCCTT AACTGACAGA ACTCAAGAAA AAGAAGCGCT TACAGCTTTA AATCTTGCCA TTGAAGCAAG AGATAATGCT CTAGATGCAG GAGATATTGG AAACTGGCAA GCCGAGCTAA ACAGTGAGAA TGAATGGATT TGGAGTTGGG ACAACCGAGC TAATAAGATG TTTGCTCTAC AGCCAGAAGA TATCGGCAAT ATAGATAGAT GGGTCCAGCA TCTTCATCCA GACGATAAAG AGCCCGCAAT TGACGCGATA CAACACTGTT TAGTAACAGG TGAGATCTAT AATGAACAAT ATAGATCTGT ACTCCCTGAT GGAGAGGTTA TTTACGTACA TGCTAGAGCT AAGATAGGAA GAGATGATCA AAATAGAATA TGTCGTATCG ATGGAGTCTG CGTCAACCAG ACACCATTCT TTAATATTCA AGCCAAACTA CAAGAAGCCA ATGACCAAGC AGAAGCTAGG GTAAAAGCCC GAACTTTAGA GCTACAACAA GCTAAAGAGA GAGCCGAGCA AGCGAATCAA ACAAAGAGTA GCTTTCTCTC GATGATGAGC CATGAATTAA GAACCCCTAT GAATGCGGTA TTGGGCTCTT TAGATCTACT TTCACTATCA AAGCAGACTC CTGAGTCAAG AGATCTTATC GAAACGGCAA CCACTTCGGC AAAAAACCTC ATATTTATCT TAAATGATAT CTTAGATATC AACAAGATAG AAGCAGGGAA GATGCAGTTA GAGCAGCGAG ATTTCTCTAT TACTGAGGTA ATAGATAATG TGGTCCAAAT ATATTATCCC CTAGCAAACG GTAAGAGAAT AAAGCTAGAT GTCACAGAGG ATCCCACAAT ACCTAAGTAT CTAGAGGGCG ATGCAGTGAA GGTACGCCAG ATAATCTTTA ACCTATTAGG AAACGCATTA AAGTTCACCT CCACTACAAC TGAAAAACAG GGAGAAGTAC AGCTAAACAT TAATATTGTT GAGCACAATA GCATTATCTA TAAAGTTGCA TTTTCAATCG TAGATAATGG TATCGGCATA GAAAAAGAGA CACAAAAAAA ATTATTTACC CCCTTCATTC AGGCTCAACG TTCAACGACA CGAGAATATG GGGGGACAGG CTTAGGTTTA GCCATCTGTG GAAACCTAGC ACAACTGATG GGAGGGGAGA TAGCACTAAC AAGTTGCCCT AATGAAGGCT CTACTTTCAA AGTAGAACTG CCATTCTGGC GTTCTAAGCA GCATACCGAT GAGCCAATAT ACCAATTGGA AGGCACCAAA ATTGCACTTT TAAATATAGA TGAGACTCAC AATACTCAAG AGTTAATCAT ACAGCACCTA GAAAGCGAAG GAGCACGTAT AGAGGTACTA GAATCTGAAA AGCAGCTGTC TTCGGCCAAA GAGTATGACA CTCTCCTCAT CCTTGTCAGC TCCCATCAGC ACTTTGCGCA GCTCAAAAAC ATTCAACATA AGCTTTCAGA TAGTAGTCAC CTGCTAGTTG CCACTTGTAG AGATGAAATC AGCACATTGC GCCAAATACT TCCTCAGACA GCAATACTGC CACTTCACCC GATGACTCGA CTACAACTTA TTAACTCAAT ACATAGATCC ATGGACAATG AACTATGCTT AGACTTAGAT GACTTAGATG ACTTAGATGA CTTAGATCTT GAGCAGCTCT CAATTGAGGA AGTAACTCAA CCCCTACCCG ATAAAGCAGG GATCTTAGTG GTTGAAGACA ACCCCCTCAA TCAGAAATTG ATCCTTAAGC AGCTTTCGAC CTTAGGGTAT AGCTGTGACC TGGCTCATGA TGGACTCGAT GGCATAGAAC ATTGGAAGAG TGCCGATTAC AAACTAGTCT TAACAGACTG TCATATGCCA AACCTTGATG GTTATGACAT GACAAAAAAA ATCAGAGAAC TAGAGGAAGA AAGTGGAAAA CAAGCAACAC CCATAGTGGC AGTCACAGGT GCTGCAATGA CTGGAGACGC AGAGCACTGC TTATCAACGG GTATGAACGA CTTCGTCAGT AAACCATTAA TTTTAGAAGA CTTAAAGAAA GTTGTTGAAA AGTGGTATGT GAATGATTGA
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Protein sequence | MDNQNKKQST NVTFAESKLH RLSHAICGAD IGIWEFTPHT QECYFSPKLK KLIGLPIDHP LTLNELRERT SHTYQHHFNI FDSENLTLGT QCNFDFKIKI AETERWFELR SEVFLNEENQ CTITGSLTDR TQEKEALTAL NLAIEARDNA LDAGDIGNWQ AELNSENEWI WSWDNRANKM FALQPEDIGN IDRWVQHLHP DDKEPAIDAI QHCLVTGEIY NEQYRSVLPD GEVIYVHARA KIGRDDQNRI CRIDGVCVNQ TPFFNIQAKL QEANDQAEAR VKARTLELQQ AKERAEQANQ TKSSFLSMMS HELRTPMNAV LGSLDLLSLS KQTPESRDLI ETATTSAKNL IFILNDILDI NKIEAGKMQL EQRDFSITEV IDNVVQIYYP LANGKRIKLD VTEDPTIPKY LEGDAVKVRQ IIFNLLGNAL KFTSTTTEKQ GEVQLNINIV EHNSIIYKVA FSIVDNGIGI EKETQKKLFT PFIQAQRSTT REYGGTGLGL AICGNLAQLM GGEIALTSCP NEGSTFKVEL PFWRSKQHTD EPIYQLEGTK IALLNIDETH NTQELIIQHL ESEGARIEVL ESEKQLSSAK EYDTLLILVS SHQHFAQLKN IQHKLSDSSH LLVATCRDEI STLRQILPQT AILPLHPMTR LQLINSIHRS MDNELCLDLD DLDDLDDLDL EQLSIEEVTQ PLPDKAGILV VEDNPLNQKL ILKQLSTLGY SCDLAHDGLD GIEHWKSADY KLVLTDCHMP NLDGYDMTKK IRELEEESGK QATPIVAVTG AAMTGDAEHC LSTGMNDFVS KPLILEDLKK VVEKWYVND
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