Gene Swoo_1024 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1024 
Symbol 
ID6115258 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1334578 
End bp1335714 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content46% 
IMG OID641632507 
Productsecretion protein HlyD family protein 
Protein accessionYP_001759412 
Protein GI170725386 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.524783 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0152153 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCTTC TACTCATTCT GACCTACACA GCAATCTGTA TTGCCATCTT TAAAATCTTT 
AAAATCCCGC TAACGAAGTG GACGGTACCA ACAGCGATAT TAGGTGGTGT TTTTATTGTT
GGCGCTTTAA TTTTATTGAT GAACTATAAC CACCCCTATA CGCCTTTTGC TAAGGAGTAC
TTTGTATCTA CGCCGATAAA CCCTGCGGTT CGAGGTGTTG TTACTTCGGT AGAGGTTGAG
CCGAATGTCC CTGTTAAAAA GGGGGATGTG CTATTTCGAT TAGATCCCAC TCCGTTTGAA
GCTATCGTAA AACAGAAGCG TGCAGCTCTA GTATCGGCTG AGCAGGAGGT CCCCCAACTT
GAAGCGGCTT GGCAGTCTGC GCTCGCTAAT GTTGAACGTG CAGAGGCTGA TAGAGACAGA
ACAAAGTCAG CTTATGACCG CTACGCAAAG GGAAAGAAAA GAGGAGGGGC TAACTCGCCC
TTTACAGAGC TTGAGCTAGA TAATAAACGT CAACTCTATC TGGCTTCTGA AGCTCAGTTA
ACAGTAGCGC AAGCGGAAGA GTTAAGAGTG AGGTTGGCTT TTGAGTCCAA TGTTGATGGT
GTTAACACTA AAGTTGCTGG AATACAGGGT CAACTTGAGA AGGCATTGTT TGATCTGGAG
ATGACCGTTG TTAGGGCACC AGCGGATGGC ATGGTGACTC AAATGGCGTT GCGTCCAGGC
ATTGTGGCTG TGCCTATGCC ACTGCGCTCT TTAATGAGTT TTATTCCCGA TGAAGATCGT
TATTTTGCGG GTGCTTTTTG GCAAAACTCC TTGCTAAGGT TAAAAGAGGG GGATGAAGCT
GAGGTGATAC TCGATGGTGC ACCAGGAGAG GTCTTTATTG GCAAGGTCGC AAAAATCTTA
CCAGCAATGG CTGAGGGTGA GATCCAGTCA AGCGGCGCGC TTATCTCATC ACGTAACTTG
ATGCAGCGTG GAAGAGTGAT TGTTTTGATT GAGATAGATC ATCATGAGAT CCGCGATAAA
TTTCCAGCAG GTGTTTCTGG ACAAGCTGCA ATCTACACGG ATCACTTCTC CCATGTGGCA
GTAATGAGAA AAGTGCTGCT TAGAATGCAG GGCTGGCTAA ATTACCTGTT CCACTAG
 
Protein sequence
MDLLLILTYT AICIAIFKIF KIPLTKWTVP TAILGGVFIV GALILLMNYN HPYTPFAKEY 
FVSTPINPAV RGVVTSVEVE PNVPVKKGDV LFRLDPTPFE AIVKQKRAAL VSAEQEVPQL
EAAWQSALAN VERAEADRDR TKSAYDRYAK GKKRGGANSP FTELELDNKR QLYLASEAQL
TVAQAEELRV RLAFESNVDG VNTKVAGIQG QLEKALFDLE MTVVRAPADG MVTQMALRPG
IVAVPMPLRS LMSFIPDEDR YFAGAFWQNS LLRLKEGDEA EVILDGAPGE VFIGKVAKIL
PAMAEGEIQS SGALISSRNL MQRGRVIVLI EIDHHEIRDK FPAGVSGQAA IYTDHFSHVA
VMRKVLLRMQ GWLNYLFH