Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1024 |
Symbol | |
ID | 6115258 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 1334578 |
End bp | 1335714 |
Gene Length | 1137 bp |
Protein Length | 378 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641632507 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001759412 |
Protein GI | 170725386 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.524783 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0152153 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCTTC TACTCATTCT GACCTACACA GCAATCTGTA TTGCCATCTT TAAAATCTTT AAAATCCCGC TAACGAAGTG GACGGTACCA ACAGCGATAT TAGGTGGTGT TTTTATTGTT GGCGCTTTAA TTTTATTGAT GAACTATAAC CACCCCTATA CGCCTTTTGC TAAGGAGTAC TTTGTATCTA CGCCGATAAA CCCTGCGGTT CGAGGTGTTG TTACTTCGGT AGAGGTTGAG CCGAATGTCC CTGTTAAAAA GGGGGATGTG CTATTTCGAT TAGATCCCAC TCCGTTTGAA GCTATCGTAA AACAGAAGCG TGCAGCTCTA GTATCGGCTG AGCAGGAGGT CCCCCAACTT GAAGCGGCTT GGCAGTCTGC GCTCGCTAAT GTTGAACGTG CAGAGGCTGA TAGAGACAGA ACAAAGTCAG CTTATGACCG CTACGCAAAG GGAAAGAAAA GAGGAGGGGC TAACTCGCCC TTTACAGAGC TTGAGCTAGA TAATAAACGT CAACTCTATC TGGCTTCTGA AGCTCAGTTA ACAGTAGCGC AAGCGGAAGA GTTAAGAGTG AGGTTGGCTT TTGAGTCCAA TGTTGATGGT GTTAACACTA AAGTTGCTGG AATACAGGGT CAACTTGAGA AGGCATTGTT TGATCTGGAG ATGACCGTTG TTAGGGCACC AGCGGATGGC ATGGTGACTC AAATGGCGTT GCGTCCAGGC ATTGTGGCTG TGCCTATGCC ACTGCGCTCT TTAATGAGTT TTATTCCCGA TGAAGATCGT TATTTTGCGG GTGCTTTTTG GCAAAACTCC TTGCTAAGGT TAAAAGAGGG GGATGAAGCT GAGGTGATAC TCGATGGTGC ACCAGGAGAG GTCTTTATTG GCAAGGTCGC AAAAATCTTA CCAGCAATGG CTGAGGGTGA GATCCAGTCA AGCGGCGCGC TTATCTCATC ACGTAACTTG ATGCAGCGTG GAAGAGTGAT TGTTTTGATT GAGATAGATC ATCATGAGAT CCGCGATAAA TTTCCAGCAG GTGTTTCTGG ACAAGCTGCA ATCTACACGG ATCACTTCTC CCATGTGGCA GTAATGAGAA AAGTGCTGCT TAGAATGCAG GGCTGGCTAA ATTACCTGTT CCACTAG
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Protein sequence | MDLLLILTYT AICIAIFKIF KIPLTKWTVP TAILGGVFIV GALILLMNYN HPYTPFAKEY FVSTPINPAV RGVVTSVEVE PNVPVKKGDV LFRLDPTPFE AIVKQKRAAL VSAEQEVPQL EAAWQSALAN VERAEADRDR TKSAYDRYAK GKKRGGANSP FTELELDNKR QLYLASEAQL TVAQAEELRV RLAFESNVDG VNTKVAGIQG QLEKALFDLE MTVVRAPADG MVTQMALRPG IVAVPMPLRS LMSFIPDEDR YFAGAFWQNS LLRLKEGDEA EVILDGAPGE VFIGKVAKIL PAMAEGEIQS SGALISSRNL MQRGRVIVLI EIDHHEIRDK FPAGVSGQAA IYTDHFSHVA VMRKVLLRMQ GWLNYLFH
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