Gene Swoo_1022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1022 
Symbol 
ID6115256 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1332969 
End bp1333931 
Gene Length963 bp 
Protein Length320 aa 
Translation table11 
GC content47% 
IMG OID641632505 
ProductD-isomer specific 2-hydroxyacid dehydrogenase NAD-binding 
Protein accessionYP_001759410 
Protein GI170725384 
COG category[C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only 
COG ID[COG1052] Lactate dehydrogenase and related dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.014752 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATAG TGGTACTCGA CGGTCATACC CTTAACCCTG GAGATTTAAG CTGGTGTGGG 
CTCAGTGAAT TGGCTGATGA AGGAGAGTTT ATCTGTTATG AGAGGACCGC AGAGTCAGAG
CTACTGAGTC GAGCCCAGGA TGCAGAGATA ATCTTCACCA ATAAGACGCC TCTTAATGCT
CAGGTGCTTT CTCAACTGCC TAAGCTTACC TATATAGGTG TGTTGGCAAC GGGCACCAAT
GTAGTTGATT TAGTCGCAGC TGCTAGCCAT GGCATGGTAG TGACCAATGT TCCCAGTTAT
GCCCCTGACG CTGTGGCTCA AATGGTATTT GCCCATATTT TTCATCATAC ACAAGGCGTT
GCCTCCCACC ATCAAGCGGT TGTTCAAGGG GCATGGAGTC AATGCCCAGA TTTTTGTTTT
ACCCTAAGCC CACTGCAATC TTTGAAGGGA AAAACCATAG GTTTAATGGG CTATGGAGCC
ATAGGTCAAC AGGTGGCCAA TATTGCACTG GCCTTCGGGA TGAAGGTATT AGTGAATACG
AGAACGCCGC TACTCGACTT GCCGACGGGA GCCATCTGGA GTGAATTGAG CGACATGCTA
CCTCAGGTGG ATATACTTTC GCTGCACTGC CCTTTGACGC TGGAAACGGA TAAGATAGTT
AATCGGGCGC TACTCAAATC GATGCGCAAA ACCGCTATTT TAGTCAATAC TGCTCGTGGT
GGATTAATCG ATGAAGTGGC TTTGAGTCAG GCACTAGCCG ATGGCGATAT CGCCGCTGCT
GGATTGGATG TACTCTCAAC TGAGCCTCCT TTAGATAACA ACCCACTACT GAATGCTATC
AATATCAGTA TTACTCCTCA TAACTCCTGG GCAACGCTGG AAGCAAGGCA AAACCTACTT
AATATTGCTG TGAATAATTT GGCTGCCTTT TTGGCTGGTA AAGCAGATAA TCAAGTGAAT
TAG
 
Protein sequence
MKIVVLDGHT LNPGDLSWCG LSELADEGEF ICYERTAESE LLSRAQDAEI IFTNKTPLNA 
QVLSQLPKLT YIGVLATGTN VVDLVAAASH GMVVTNVPSY APDAVAQMVF AHIFHHTQGV
ASHHQAVVQG AWSQCPDFCF TLSPLQSLKG KTIGLMGYGA IGQQVANIAL AFGMKVLVNT
RTPLLDLPTG AIWSELSDML PQVDILSLHC PLTLETDKIV NRALLKSMRK TAILVNTARG
GLIDEVALSQ ALADGDIAAA GLDVLSTEPP LDNNPLLNAI NISITPHNSW ATLEARQNLL
NIAVNNLAAF LAGKADNQVN