Gene Swoo_0996 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0996 
Symbol 
ID6115230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1305619 
End bp1306626 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content43% 
IMG OID641632479 
Productextracellular solute-binding protein 
Protein accessionYP_001759384 
Protein GI170725358 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1840] ABC-type Fe3+ transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000369263 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAATAA TAAAAAATCT GGCAGTTCTA GGCTTAGTGT GTTTTGCCTC TGTTGCCAAT 
GCCGCAGATA AATTAACTGT TTACTCCTAC CGACAAGCTT TTTTAATCGA TCCAATCTTA
AATGACTTTA CCAAAGAGAC GGGGATCGAT GTTGATGTGG TCTTTTCCAA AAAAGGGATT
GCAGAAAGAA TGATGCGTGA AGGGAGACTT TCGCCTGCCG ATGTGGTGCT TACATCAGAC
TTTTATCGCC TAATGGAGTT AGTAGATAAA GAGCTCGTGG TTCCAGCTTC CAGTGAACTG
TTAAACAGCA ATATTCCAGC TCAGTATCGC TCTCCTGATG AAACCTGGTA TGCATTAACA
ATGCGAGTGC GCAATATCTA CTCCTCTAAA GAGCGTCTAG GTAAGCTCAA TATTAATTAT
GAAGATCTGG CAGATCCCAA ATACAAAGGA AAAATCTGTA CTCGAAGTGG TAAGCACCCT
TATAACATCT CTTTGGTTGC TTCTATGATT GCCCATCACG GTGAGGCAGA AACTAAAGCT
TGGTTGACTG GATTAAAAGC AAACTTAGCC CGTAAGCCTC AGGGAAATGA TCGCGCTCAG
GTTAAAGCGG TTAAAGAGGG ACTTTGTGAT CTAGCCATAG GGAATAGCTA TTATCTAGGT
AAGATGTTGC AAGATCCTAA ACAGGTACCA TGGGCTGAAG CGGTCGAGAT CAATTTCCCA
AATCAAGATA ACTCAGGCTC TCATATCAAC GTCTCCGGTA TGGCGTTGGC TAAGCACTCT
CGCAACAAAG ATAATGCACT TAAGTTGATG GAATATCTGT CGGGTGATAA AGCGCAGAAA
GCTTATGCTG AAGTGAACAT GGAGTATCCG GTTAAAGCGG ATGTTGAGCC ATCTGCTTTG
GTTGCATCTT GGGGTGAGTT CACAGCGGAT AGTTTACCTA TCTATAAGCT TGCCGAATTC
CATCATGCTG CGGTTAAGAT GCTAGATGAG GTTAAGTTCG ACCTATAA
 
Protein sequence
MKIIKNLAVL GLVCFASVAN AADKLTVYSY RQAFLIDPIL NDFTKETGID VDVVFSKKGI 
AERMMREGRL SPADVVLTSD FYRLMELVDK ELVVPASSEL LNSNIPAQYR SPDETWYALT
MRVRNIYSSK ERLGKLNINY EDLADPKYKG KICTRSGKHP YNISLVASMI AHHGEAETKA
WLTGLKANLA RKPQGNDRAQ VKAVKEGLCD LAIGNSYYLG KMLQDPKQVP WAEAVEINFP
NQDNSGSHIN VSGMALAKHS RNKDNALKLM EYLSGDKAQK AYAEVNMEYP VKADVEPSAL
VASWGEFTAD SLPIYKLAEF HHAAVKMLDE VKFDL