Gene Swoo_0988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0988 
Symbol 
ID6115222 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1299614 
End bp1301389 
Gene Length1776 bp 
Protein Length591 aa 
Translation table11 
GC content43% 
IMG OID641632471 
ProductABC transporter related 
Protein accessionYP_001759376 
Protein GI170725350 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG5265] ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.026388 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCCCT CTCTCTATTT CGATGGACCT GTAGATAAAC TAAATTGGCA TGTGCTTAAA 
CTCCTTTGGC CCTATCTTTT TGAGTATAAA AAGCGGGTTG CTTTGGCACT TTTATGTTTA
ATTATCGCTA AAGTTGCCAG TGTTTCTTTA CCCTTTGTGC TTAAATCTCT AGTTGATACA
TTGACTGAAG CATCACCTGA GCAGTTGATT AGCGTGCCTA TCTCTTTGGT CATCGCTTAT
GGATCACTGC GCCTATTAAA TACCCTTATT TCTGAAGTTA GAGATACCCT TTTTGGCCGA
GTGACTGAGC GAGCTATACG TCGTTTAGGC CTGTCTGTTT TTGAGCATCT ACATCGATTA
GATCTCGAGT TTCACCTAGA GCGTAGGACT GGAGGTCTAT CCAGAGACAT AGAGCGAGGA
ACCAGCGGGG TTAACTTTTT GATGCGGTTT ATGGTGTTTA ATATTGTGCC GACAATATTA
GAGATCGCTC TGGTGATAGG TATTCTATTT TACAACTATG GGGTTGCATT TGCGGCGATT
ACACTAGGAG CCGTTGTGGC CTATGTAGCT TTTTCCGTGT TAGCCACTGA GTGGCGAACA
GGCTTTGTGA GGGAAGCGGC AAAAGCCGAC TCACATTCAA ATTCTCGTGC AATTGACAGC
TTACTTAATT ATGAGACGGT AAAGTATTTC AATAATGAAA CCTATGAAGC TCAAAGGTAT
GACATGGCAC TGGAGGAGTG GGAGCATGCA AAGCGCAAGA ATCGCTTATC TCTTTTTGCA
CTCAATGCGG GTCAAGCGTT TATTATCTCA ACGGCAATGA CCTTGATGCT CGCCTTAGCA
GGCTCTCACG TAGTGAGTGG CGCGATGACG ATAGGTGATT TTGTGTTGAT AAATGCTTTT
ATGATGCAGT TATTTATTCC ACTTAATTTT TTAGGTTTTG TCTATCGAGA GATCAGAGGG
GCATTAGCCA ATATTGAGCG TATGTTTGGT TTATTAGACA GAAAGCCTCT GATTGAAGAT
AAAGAGAATG CAAAAAAGCT GGCGATAGGA GCGGGTGAGT TAACATTTGA GGATGTTAGC
TTTAGTTATG ACTCTCGTCA GATTTTAACA TCAATTAGCT TTTCTATTTT ACCGGGTCAG
AAAGTGGCTA TTGTTGGCGA TAGTGGTGCT GGCAAATCAA CCATAGTGAA GCTTCTGTTT
CGTTTTTATG ATGTGGATAG CGGAAGCATC AGTTTAGACG GGGTCAATAT TGACTCACTA
ACTCAGCATG CACTTAGACA ATCCATAGCG ATAGTGCCCC AAGATACGGT GCTGTTTAAT
GACTCTTTAT TAGAGAATAT TCGTTATGGC AGACCGGGTG CTAGTGATGA GGATGTTGCT
GAGGTTATTA AGATGGCACA CCTTGCTCAC TTTGTTAGCT CCTTGCCCGA AGGCTGGGAT
ACCAAAGTGG GAGAGAGAGG GTTAAAGCTT TCCGGCGGCG AGAAACAACG AGTTGCGATT
GCAAGAGCGA TCTTGAAGGG CTCCCCATTA TTGGTGTTTG ATGAGGCGAC ATCATCACTT
GATAGTCACT CAGAACAGGC GATATTAACC GCATTGAAAG AGGTGGCTAA GGGGCATACA
AGCTTGGTGA TTGCCCATAG GTTATCAACA GTGGTTGATG CCGATCAGAT TATCGTGTTG
AGCCAAGGTC AAATTGTTGA AACAGGCGAC CATTCATCCC TATTAAAAAA CAATGGTTTA
TATTCCAAAT TGTGGACTAT CCAAAATCAG AAATGA
 
Protein sequence
MRPSLYFDGP VDKLNWHVLK LLWPYLFEYK KRVALALLCL IIAKVASVSL PFVLKSLVDT 
LTEASPEQLI SVPISLVIAY GSLRLLNTLI SEVRDTLFGR VTERAIRRLG LSVFEHLHRL
DLEFHLERRT GGLSRDIERG TSGVNFLMRF MVFNIVPTIL EIALVIGILF YNYGVAFAAI
TLGAVVAYVA FSVLATEWRT GFVREAAKAD SHSNSRAIDS LLNYETVKYF NNETYEAQRY
DMALEEWEHA KRKNRLSLFA LNAGQAFIIS TAMTLMLALA GSHVVSGAMT IGDFVLINAF
MMQLFIPLNF LGFVYREIRG ALANIERMFG LLDRKPLIED KENAKKLAIG AGELTFEDVS
FSYDSRQILT SISFSILPGQ KVAIVGDSGA GKSTIVKLLF RFYDVDSGSI SLDGVNIDSL
TQHALRQSIA IVPQDTVLFN DSLLENIRYG RPGASDEDVA EVIKMAHLAH FVSSLPEGWD
TKVGERGLKL SGGEKQRVAI ARAILKGSPL LVFDEATSSL DSHSEQAILT ALKEVAKGHT
SLVIAHRLST VVDADQIIVL SQGQIVETGD HSSLLKNNGL YSKLWTIQNQ K