Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0988 |
Symbol | |
ID | 6115222 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 1299614 |
End bp | 1301389 |
Gene Length | 1776 bp |
Protein Length | 591 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641632471 |
Product | ABC transporter related |
Protein accession | YP_001759376 |
Protein GI | 170725350 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG5265] ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.026388 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCCCT CTCTCTATTT CGATGGACCT GTAGATAAAC TAAATTGGCA TGTGCTTAAA CTCCTTTGGC CCTATCTTTT TGAGTATAAA AAGCGGGTTG CTTTGGCACT TTTATGTTTA ATTATCGCTA AAGTTGCCAG TGTTTCTTTA CCCTTTGTGC TTAAATCTCT AGTTGATACA TTGACTGAAG CATCACCTGA GCAGTTGATT AGCGTGCCTA TCTCTTTGGT CATCGCTTAT GGATCACTGC GCCTATTAAA TACCCTTATT TCTGAAGTTA GAGATACCCT TTTTGGCCGA GTGACTGAGC GAGCTATACG TCGTTTAGGC CTGTCTGTTT TTGAGCATCT ACATCGATTA GATCTCGAGT TTCACCTAGA GCGTAGGACT GGAGGTCTAT CCAGAGACAT AGAGCGAGGA ACCAGCGGGG TTAACTTTTT GATGCGGTTT ATGGTGTTTA ATATTGTGCC GACAATATTA GAGATCGCTC TGGTGATAGG TATTCTATTT TACAACTATG GGGTTGCATT TGCGGCGATT ACACTAGGAG CCGTTGTGGC CTATGTAGCT TTTTCCGTGT TAGCCACTGA GTGGCGAACA GGCTTTGTGA GGGAAGCGGC AAAAGCCGAC TCACATTCAA ATTCTCGTGC AATTGACAGC TTACTTAATT ATGAGACGGT AAAGTATTTC AATAATGAAA CCTATGAAGC TCAAAGGTAT GACATGGCAC TGGAGGAGTG GGAGCATGCA AAGCGCAAGA ATCGCTTATC TCTTTTTGCA CTCAATGCGG GTCAAGCGTT TATTATCTCA ACGGCAATGA CCTTGATGCT CGCCTTAGCA GGCTCTCACG TAGTGAGTGG CGCGATGACG ATAGGTGATT TTGTGTTGAT AAATGCTTTT ATGATGCAGT TATTTATTCC ACTTAATTTT TTAGGTTTTG TCTATCGAGA GATCAGAGGG GCATTAGCCA ATATTGAGCG TATGTTTGGT TTATTAGACA GAAAGCCTCT GATTGAAGAT AAAGAGAATG CAAAAAAGCT GGCGATAGGA GCGGGTGAGT TAACATTTGA GGATGTTAGC TTTAGTTATG ACTCTCGTCA GATTTTAACA TCAATTAGCT TTTCTATTTT ACCGGGTCAG AAAGTGGCTA TTGTTGGCGA TAGTGGTGCT GGCAAATCAA CCATAGTGAA GCTTCTGTTT CGTTTTTATG ATGTGGATAG CGGAAGCATC AGTTTAGACG GGGTCAATAT TGACTCACTA ACTCAGCATG CACTTAGACA ATCCATAGCG ATAGTGCCCC AAGATACGGT GCTGTTTAAT GACTCTTTAT TAGAGAATAT TCGTTATGGC AGACCGGGTG CTAGTGATGA GGATGTTGCT GAGGTTATTA AGATGGCACA CCTTGCTCAC TTTGTTAGCT CCTTGCCCGA AGGCTGGGAT ACCAAAGTGG GAGAGAGAGG GTTAAAGCTT TCCGGCGGCG AGAAACAACG AGTTGCGATT GCAAGAGCGA TCTTGAAGGG CTCCCCATTA TTGGTGTTTG ATGAGGCGAC ATCATCACTT GATAGTCACT CAGAACAGGC GATATTAACC GCATTGAAAG AGGTGGCTAA GGGGCATACA AGCTTGGTGA TTGCCCATAG GTTATCAACA GTGGTTGATG CCGATCAGAT TATCGTGTTG AGCCAAGGTC AAATTGTTGA AACAGGCGAC CATTCATCCC TATTAAAAAA CAATGGTTTA TATTCCAAAT TGTGGACTAT CCAAAATCAG AAATGA
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Protein sequence | MRPSLYFDGP VDKLNWHVLK LLWPYLFEYK KRVALALLCL IIAKVASVSL PFVLKSLVDT LTEASPEQLI SVPISLVIAY GSLRLLNTLI SEVRDTLFGR VTERAIRRLG LSVFEHLHRL DLEFHLERRT GGLSRDIERG TSGVNFLMRF MVFNIVPTIL EIALVIGILF YNYGVAFAAI TLGAVVAYVA FSVLATEWRT GFVREAAKAD SHSNSRAIDS LLNYETVKYF NNETYEAQRY DMALEEWEHA KRKNRLSLFA LNAGQAFIIS TAMTLMLALA GSHVVSGAMT IGDFVLINAF MMQLFIPLNF LGFVYREIRG ALANIERMFG LLDRKPLIED KENAKKLAIG AGELTFEDVS FSYDSRQILT SISFSILPGQ KVAIVGDSGA GKSTIVKLLF RFYDVDSGSI SLDGVNIDSL TQHALRQSIA IVPQDTVLFN DSLLENIRYG RPGASDEDVA EVIKMAHLAH FVSSLPEGWD TKVGERGLKL SGGEKQRVAI ARAILKGSPL LVFDEATSSL DSHSEQAILT ALKEVAKGHT SLVIAHRLST VVDADQIIVL SQGQIVETGD HSSLLKNNGL YSKLWTIQNQ K
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