| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0971 |
|---|
| Symbol | |
|---|
| ID | 6115205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 1282200 |
|---|
| End bp | 1283903 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641632454 |
|---|
| Product | nitrate/nitrite sensor protein NarQ |
|---|
| Protein accession | YP_001759359 |
|---|
| Protein GI | 170725333 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3850] Signal transduction histidine kinase, nitrate/nitrite-specific |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.630053 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACG GTAGTCTAAC ATCCACCATT TTAGGTCTAA TGTTAACGTT AATTTTATTA
TCCAGTGGTT TAGCAACCTT TGCGATTATC AACCTGACCT ATAGCTTAGG CGATGCTCGC
GCCATCAACG CATCTGGCTC CTTACGAATG CAAAGTTATC GTTTAATGTT TTACGCTAAT
TCAGGGAGTG AAGAGTCTGA AGGTAAGATA AAGGAGTTTG AAAATACCCT TTATTCTGAA
GCACTAAAGC GCTCTGTTGT CTGGTATAGT CCCCAAGAGT TGGAAGATCA ATATCGATTA
GTGGTTCAGA AGTGGAAGGT GATGAAATCC TACATTGAAG ATGAAAATTC ACGCCTTTAT
GCCGCCTCGC TTAAAGACTT TGTTGATACT ATAGATCTCC TGGTGCTTGA AACTGAGCTT
CATGCAGCCT TTAAGCTAAA AATTCTAGCT ACAAGTCAGA TTTTTGGGTT GGGGTTAATG
CTATTTATTG CATTTTTAGC CGTTCGCTTT ACCAAGAAAA AAGTGGTTAC GCCATTGAAG
CAGTTAATGG AGTCCGCCAA CACCATATCT AAAGGGGACT TTGATGTTCG GATGCCTAAA
ACTGAGTATA TCGAACTCAG CTCATTAAGT GATGCACTCG ACAGCACCGC AAAGGAGCTC
TCTACCCTTT ATCGCAACCT CGAATCCCAA GTAGAGGAGA AGACTCATGC ATTAACTCGA
GCCAACAATG AACTAACGCT ACTTTACGAC AATCTAGTCA TGTTGCACTC AGGCACCTTA
GACATTAAAA CCCTGAAAAA AGCGTTAAAC CAGCTCAGTA AACATGAACC TCATACCTTC
TTACGTCTGG TTATTTCACA AGATCAGGAA AGTAAGCAAG TGATTGAAGC CGATAATGGC
TGGCCGCTGG CAAGTGGGAA TCAAATTCAC TACCCATTGA AGTTTGAAGA CTACGAACTG
GGCTACCTTG AGGTGATCTC AAGTACGCCA AATCATCCTT TATTTGATAA TTTTGCCATT
ATGCTGGCCC GCTCTATTGT TATCTTTAAT GCTGGCGAGC AGAAGCAACA GTTAGCACTA
ATGGAGGAGC GTGGCGTTAT TGCCAGAGAG CTACATGACT CGCTAGGTCA AATTCTCTCA
TTTTTAAAAA TACAGGTAAA TCTGCTCTCT AAGGGGTTAG ACACCGCATG TAGAAGCCCT
CAAGTAGAGG GACAGATTGC AGAGATAAAT GAGGGGGTAA ACACCGCCTA TGTGCAATTA
AGAGAGCTTC TTTCTACCTT TAGGCTCACC ATTAACGACC CTAACCTGAA CCATGCTATT
GAGGTGATGT TAGATCAGCT AAGAAGTCAG TCAAAAATAT CTATCTCACT GGACTACAAG
CTACCGCTGC AACTATTAGG CGCGCATCAG CATATACACG TGTTACAGTT GACCCGAGAA
GCGACACTCA ATGCGATAAA GCATGCACAG GCTCAACACA TAAAGATCAA ATGTTTTAAA
AGCTCTGATA CCCATGTCAC CATCTCTATC AGCGATGATG GCGTAGGTAT AGAACAACTC
AAAGAGCGCG ATCAACACTT TGGCATAGGC ATTATGCATG AGCGTGCGAG CCGCTTATCA
GGTATAGTAG AGTTTGGCAG TAACCCTGAT GGAGGAACAA CAGTGACGCT CACTTTTCCA
CCTCAGCAAA AACCTGTTCA ATAA
|
|---|
| Protein sequence | MKNGSLTSTI LGLMLTLILL SSGLATFAII NLTYSLGDAR AINASGSLRM QSYRLMFYAN
SGSEESEGKI KEFENTLYSE ALKRSVVWYS PQELEDQYRL VVQKWKVMKS YIEDENSRLY
AASLKDFVDT IDLLVLETEL HAAFKLKILA TSQIFGLGLM LFIAFLAVRF TKKKVVTPLK
QLMESANTIS KGDFDVRMPK TEYIELSSLS DALDSTAKEL STLYRNLESQ VEEKTHALTR
ANNELTLLYD NLVMLHSGTL DIKTLKKALN QLSKHEPHTF LRLVISQDQE SKQVIEADNG
WPLASGNQIH YPLKFEDYEL GYLEVISSTP NHPLFDNFAI MLARSIVIFN AGEQKQQLAL
MEERGVIARE LHDSLGQILS FLKIQVNLLS KGLDTACRSP QVEGQIAEIN EGVNTAYVQL
RELLSTFRLT INDPNLNHAI EVMLDQLRSQ SKISISLDYK LPLQLLGAHQ HIHVLQLTRE
ATLNAIKHAQ AQHIKIKCFK SSDTHVTISI SDDGVGIEQL KERDQHFGIG IMHERASRLS
GIVEFGSNPD GGTTVTLTFP PQQKPVQ
|
|---|
| |