| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0940 |
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| Symbol | lysS |
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| ID | 6115174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1248028 |
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| End bp | 1249533 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641632423 |
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| Product | lysyl-tRNA synthetase |
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| Protein accession | YP_001759328 |
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| Protein GI | 170725302 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0434875 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTGAAC AAGTACTACC AGATGAGAAC AAGTTAATTG CAGAGCGTCG TGCCAAGCTT
GAGCACATTC GCGCTAACTG CCCTGCAAAT GGTCACCCAA ATAACTTCGA TCGTAAACAT
AAAGCGGCAG ATATTCAGGC TGAATTTGGT AACAACACCA AAGAGGAGCT TGAAGGCATG
GGGATCCAGC GCAGCATCGC TGGTCGTATC ATGGCAAAAC GTGGTCCATT TTTGGTGATC
CAAGATGTTA GTGGACGTAT TCAAGCCTAT GCTGGTAAAG ATGTTCAAAA AGATCTTAAG
GCTACATTCC AGGGCTTAGA TATTGGTGAC ATTATCGGTG TGACGGGTCA ACTTCACCTA
TCTGGTAAAG GCGATCTGTA TGTGAACATG GAAGAGTACC AGTTGCTGAC TAAAGCACTG
CGTCCACTAC CTGAGAAGTT CCACGGTTTG ACTGACCAGG AGACTCGCTA CCGTCAGCGT
TATGTTGACT TGATTGTGAA TGAAGATTCG CGCAACGCCT TTATTATGCG CTCTAAAGTG
GTTTCTGCTA TCCGTAACTT TATGGTTAAA AAAGAGTTTA TGGAAGTTGA AACCCCTATG
ATGCACAGCA TTCCAGGTGG CGCTTCAGCT CGTCCTTTCG AAACTCACCA TAATGCTCTA
GATATCGCTA TGTATCTGCG TATCGCACCT GAGCTTTACC TGAAGCGTTT GGTTGTAGGT
GGTTTTGAGC GTGTGTTCGA GATCAACCGT AACTTCCGTA ACGAAGGTCT ATCACCGCGT
CATAACCCAG AATTCACTAT GATGGAATTC TACATGGCTT ATGCGGATTT CAATGATCTA
ATGGATCTGA CTGAAGAGAT GCTAAGTTCT ATCGCCACTG AGCTTTGTGG TTCTCCACAG
CTTCCATACG GTGAGCATAC TGTTGATTTT GGCGGCCCAT ACGCGCGTTT GAGCATGTTA
GATGCAATCA AGAAGTACAA CCCTGATAAC GCAACAATTC AGTCTATGAC CTATGAAGAG
GTTAAAGATG TTGAGTTTAT GCGTGATTTG GCTAAGAGCT TAGGCATGAC AATCGAGAAG
TTCTGGACCT GTGGTCAGTT ACTTGAAGAG ATCTTCGGTG AAACTGCTGA AACTCAATTG
ATGCAGCCAA CTTTCATTAC TGGTTACCCA GCAGATATCT CTCCGCTTGC ACGTCGTAAT
GATGACAATC ATTTCATCAC AGACCGTTTT GAGTTCTTTA TCGGCGGCCG TGAAGTGGCG
AATGGTTTCT CTGAGCTTAA CGATGCAGAA GATCAAGATA ACCGCTTTAA AGCGCAGGTT
GATGCGAAAG ACGCTGGTGA TGATGAAGCT ATGTTCTACG ATGCAGACTA CATTACTGCA
CTTGAGCACG GACTACCACC AACAGCAGGT CAAGGTATCG GTATCGATCG TCTAGTGATG
TTGTTTACTA ATACACACAC GATCCGTGAC GTTATCCTGT TCCCAGCGAT GCGCCCACAA
GCTTAA
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| Protein sequence | MTEQVLPDEN KLIAERRAKL EHIRANCPAN GHPNNFDRKH KAADIQAEFG NNTKEELEGM
GIQRSIAGRI MAKRGPFLVI QDVSGRIQAY AGKDVQKDLK ATFQGLDIGD IIGVTGQLHL
SGKGDLYVNM EEYQLLTKAL RPLPEKFHGL TDQETRYRQR YVDLIVNEDS RNAFIMRSKV
VSAIRNFMVK KEFMEVETPM MHSIPGGASA RPFETHHNAL DIAMYLRIAP ELYLKRLVVG
GFERVFEINR NFRNEGLSPR HNPEFTMMEF YMAYADFNDL MDLTEEMLSS IATELCGSPQ
LPYGEHTVDF GGPYARLSML DAIKKYNPDN ATIQSMTYEE VKDVEFMRDL AKSLGMTIEK
FWTCGQLLEE IFGETAETQL MQPTFITGYP ADISPLARRN DDNHFITDRF EFFIGGREVA
NGFSELNDAE DQDNRFKAQV DAKDAGDDEA MFYDADYITA LEHGLPPTAG QGIGIDRLVM
LFTNTHTIRD VILFPAMRPQ A
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