| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0937 |
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| Symbol | |
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| ID | 6115171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 1241094 |
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| End bp | 1245374 |
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| Gene Length | 4281 bp |
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| Protein Length | 1426 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641632420 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_001759325 |
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| Protein GI | 170725299 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases
[COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.137872 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGAAC TTACAATAGA TGGTAAGTGT CTATCGGCTA ATCCAGAAAC AACTCTGTTC
CACATCGCAA AAGAAGCCGG GATCACTATC CCAAACCTCT GTCAGCAGCA TAATGGCCTA
AACTTTCCCA ATAACGAGAA GAGCCACTGC AATCTGTGTC AGGTGGAAGT GCAAACCTTC
GATAACCAGA ACCAAGCGAA TACAGTCACA GTCAAAGCCT GTGATACTCA GTTAGTATCC
CTCTATTCAA ATAACACCCA GAAAATTGAA GTTATCACTC AATCAACTCG ACTTAGTTTA
CTCAGACAAG CTGCGCTAAA TGAGATCCTT AAAGATCATT TCGCCGACTG TCAGGCTCCC
TGCCAGCAAG CCTGCCCAGC AGGTGTCGAT GTGCAATCTT ACCTCTTTCA TATCGCACAA
GGAGAGCACA CTGAAGCGGT AAAAGTGATA AAGCAAACCC TGCCACTTCC CCTCTCAATA
GGACGAGTTT GCCCCGCTTT TTGTGAAACA GAGTGTCGTC GTGGCTTAAT CGATGAACCC
GTTGCCATTA GGCAACTAAA ACGCCATGCA GCCGATCTCG ATATTCAGGA CGAATTCAGC
TACATGCCAG AGAAGTTACC TGCAACAGGT AAAAAGGTCG CAATAATTGG CAGCGGACCT
GCAGGGATAA CCACAGGTTA CTATCTCTCA AACTCAGGCC ATGATGTCAC TATCTTTGAG
GCGATGCCAA AAGCTGGCGG TTGGCTTCGT TATGGTATTC CTGAATATCG ACTTCCTAAG
GCGATCCTCG ACAAAGAGAT TGAACAACTG TGTCAAAATG GCTTGAAGAT CCTGACCAAT
ACTAAACTTG GTGAACAGAT ACATCTTAAC CAGCTAGTCG AAGACTTCGA TGCGGTTTGT
CTGGCAATAG GCGCTCAAAA AGCCGTGGCA ATGGATTATC CAGGCAGCGA TCTGGCAGGC
TGCTATTTAG GCGTTGACTA CCTAAAAGAT CACTGCACAG ATAAACATCT CATCACAGGT
AAAAAAGTGA TGGTAATTGG AGGGGGAAAT ACCGCTATCG ATTGTGCTCG CACTGCTAAA
CGTGAAGGTG CAGAAGTCAC ACTGGTCTAC CGCCGTACAC GGGATGAGAT GCCAGCAGAG
CTGTATGAGA TAGAGGAAGC TGAACATGAA GGGATTAAGT TTCACTACTT AACTAACCCA
ATTGAGAACC ACAGTGACTC TCAAGGGCGT GTTATGAGTG TCACCCTTGA AAAGATGAGA
TTAGGCGAGC CAGATCCCTC AGGGCGAAGA GCTCCCATCC CTACAGGTGA AACTTTCACT
CAAGCATTTG ATACCGTGAT CCCAGCGGTC TCTCAGACAC CAGATATGGC ATTTCTATCG
GATCCACAAA GTCAGCTCAC TACAGGAAAG CTCGCTCTCA CTCGCTGGAA CACCTTCCAA
GGTTGTGAGC AGACCATGTC TGCAGGCCTA TCAACCAAGA TAGATAAACT CTTTGTACTT
GGTGACTCGA GAACGGGTCC TGCTACTGCT GTTGCAGCCG TTGCCGATGG AAGAAAAGCC
GCACAAGCGA TCGAAAAACT GCTCACCTCA GGCTTAAGCT GCGAACTGGT GCAGCATGAA
TTTAACTCTA CTAAATCAAT AAAAACCGCA AATCTTAATG GGGATATTTA CCCTAATGCA
CCTAAACAGC TGAAGGCAAA AATGCCTGAG CTTAGCATTA AAGAGAGAGC TCTCAATTTC
AATGAGATTG AGTTAGGCTT TGAGCCCAGC GAGGCGATGA AAGAGGCTGC AAGATGCCTT
GAGTGTGCCT GCCAGGCAAA TACAGACTGT AAACTTCGAG ATTATGCCAC CGAATACAAG
GTTGATAACT GTACTCAAGA TGCCACCCTC TCTCCCAGAC AGTTCAGTGT CGATAACTCA
AGTCCTTTTA TCACCTTCGA CGCAAACCGC TGTATAAGCT GCGGTGCATG TGTCGATATC
TGTCAGCAAC AAAGTGGCCA TAAAGCAATC AGCTTCACAG AGGAGCATTA CCAAGCACTC
CCGACCCAAG AGAAAAACTC AGTACGAAGA GCGCCGCGAG TGGGGTTTGC AGCCACCATG
TTAGACAGTA ACTGTGTGCA ATGTGGTAAC TGTATTCAAG TCTGCCCAAC TGGCGCCCTT
GTCGATGCAA GAGACAAGAC TCAAGGCCGC ACAAAGCCTA GTGAACAAGC CAGTACCATA
TGTACATACT GCGGTATCGG TTGCCGCCTC AATGTGCACG TAGACAGAGA GAATAACAAG
ATAACCCGAG TCAGTGGCGA TCCAGACTCA GTGGTCAATC AAGGCATGCT ATGTGTTAAA
GGCCGCTTTG GTTTCGATTT TATCACTAGC AAGCAGAGAC TCACCCAGCC ACTACTGCGC
AAAGATAAAC AACTTGTGCC AGTATCTTGG AGTGAAGCAT TAGACTTTAT CGGCACTAAA
CTTAGGCATA TTATCAGCTC CCATGGCGGT AATGCCGTTG CTGGGCTCGC CTCAGCCAAA
GCTACCAATG AAGATAACTA TCTGTTTCAG AAGTTATTCA GGGCAGTTAT TGGCACAAAT
AACATCGATC ATTGTGCACG CCTTTGCCAC GCCTCAACAG TCACAGCGCT ACAAGAGAGC
CTTGGAAGCG GTGCCATGAC CAATGATATT CCAGGCATTG TAGATTCTGA TCTTATCTTT
ATCATAGGAT CTGATACCAG TAACGCGCAT CCCATTATCG CATCCCATAT AAAATCAGCC
ATTCGCCAGC ATGGCGCAAC CTTACTTGTA GCCGATCCCA AAAAAGTCGA TATTGCCGAT
CATGCCAAGC TCTATGTCAG CCATAAGCCT GGCACAGATG TGATGCTACT TAACGCCATC
ATGCAAGTTA TCATCAAAAA TGATTGGCAC GATCTCGATT ATATTCAAGC TAGGGTCGAT
GACTACAGTT CACTCTATGA TGAGGTGATG AAAAGCGACT ACCGCCTTGA AAATGCAGCT
CTAATAACTG GCGTTCCTGC CAAACAGATA ACTGAAATGG CAAACATGAT CGGTACAGCA
ACTAAAACTG CCGTCTACTA TGCCATGGGC GTGACCCAAC ATACCTCAGG TCATAACAAT
GTTACAGCCA TCGCCAATCT GCAGCTACTT TGCGGCAATA TCGGCATCAA AGGGGGCGGT
ATTAACCCTC TTCGGGGACA GAGCAATGTC CAAGGAGCTT GCGACATGGG CGCCCTACCA
AACTACTTCA GCGGCTATCA AAAAGTTGAC GATCCCTTGG TTCAAGTTCG TTTTCGAGAA
GCTTGGGGAA TAGAAGATCT GCCCCATCAA ATCGGCTTAG CCGCAACCGA AATGATGCAA
GCCTTATCCC ATGGGGAATT AAAGGCGCTC TATGTAATGG GAGAAAACCC AGTATTGAGC
GATCCCGATC AAGCCCATGT TCTGCTGGCG CTCAAAAAAG CAGAGCTGTT AATTGTACAA
GATATATTCC TTACAGAGAC CGCAGCACTG GCAGATGTCG TGCTTCCCGC AAATGCTTTC
GCAGAAAAAA GCGGTCACTT TACCAATACC GAGCGGCGAA TTCAGCAGCT ACAAACTGTG
GTCAAAGCTC CGGGCAGTGC AAGACTCGAC TGGCAGATAA TTCAAGATAT CGCCAATCGA
CTCGGCGCAG ATTGGCACTA TAGAGATGAA AAACAGATCT GGCACGAGAT CACCTGTGTG
ACTCCGCAAT ACAGAGGGGC TAGCTGGCAA GCGATAGATA GCCGTACTCG AAATGGAAAA
CTGGGGCTCC AATGGCCTTG CCCAGCAGAA AACCACCCAG GGACTCCAAT TTTACATACG
ACTAAGTTTA CCCGAGGTCG GGCAAAGATG ACGCCGGTAA GTTACAGCTT ACCTGCCGAA
CCCACTTGTA GTGAATACCC ACTTACCCTA TCGACGGGAC GACTGCTGGA GCAGTTCCAC
ACAGGCACAT TGACTCGTAA AACACCGGGG TTAGATGAAC TTGGTAAACC AAAAGTCATG
ATATCCGTCT TCGATGCCGA CAAACTGGGT ATAAACAATG GCGATATGCT GAAGATATCC
AGTCGCCGAG GTGAGATAGA GATCTGCGCT TTTGTCACTC GTCGTGCTCA AGTAGGCGTC
TTGTTTCTCC CCTTCCACTT CGTTGAAGCG GCCGCCAATA AACTCACCAT TAACGCAATC
GATCCTATCG CCAAAATTCC TGAATTTAAG ATCTGTGCAG TTAAGGTTGA AAAAGTGTCT
GTAACAGCAG AGCTGAGTTA A
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| Protein sequence | MKELTIDGKC LSANPETTLF HIAKEAGITI PNLCQQHNGL NFPNNEKSHC NLCQVEVQTF
DNQNQANTVT VKACDTQLVS LYSNNTQKIE VITQSTRLSL LRQAALNEIL KDHFADCQAP
CQQACPAGVD VQSYLFHIAQ GEHTEAVKVI KQTLPLPLSI GRVCPAFCET ECRRGLIDEP
VAIRQLKRHA ADLDIQDEFS YMPEKLPATG KKVAIIGSGP AGITTGYYLS NSGHDVTIFE
AMPKAGGWLR YGIPEYRLPK AILDKEIEQL CQNGLKILTN TKLGEQIHLN QLVEDFDAVC
LAIGAQKAVA MDYPGSDLAG CYLGVDYLKD HCTDKHLITG KKVMVIGGGN TAIDCARTAK
REGAEVTLVY RRTRDEMPAE LYEIEEAEHE GIKFHYLTNP IENHSDSQGR VMSVTLEKMR
LGEPDPSGRR APIPTGETFT QAFDTVIPAV SQTPDMAFLS DPQSQLTTGK LALTRWNTFQ
GCEQTMSAGL STKIDKLFVL GDSRTGPATA VAAVADGRKA AQAIEKLLTS GLSCELVQHE
FNSTKSIKTA NLNGDIYPNA PKQLKAKMPE LSIKERALNF NEIELGFEPS EAMKEAARCL
ECACQANTDC KLRDYATEYK VDNCTQDATL SPRQFSVDNS SPFITFDANR CISCGACVDI
CQQQSGHKAI SFTEEHYQAL PTQEKNSVRR APRVGFAATM LDSNCVQCGN CIQVCPTGAL
VDARDKTQGR TKPSEQASTI CTYCGIGCRL NVHVDRENNK ITRVSGDPDS VVNQGMLCVK
GRFGFDFITS KQRLTQPLLR KDKQLVPVSW SEALDFIGTK LRHIISSHGG NAVAGLASAK
ATNEDNYLFQ KLFRAVIGTN NIDHCARLCH ASTVTALQES LGSGAMTNDI PGIVDSDLIF
IIGSDTSNAH PIIASHIKSA IRQHGATLLV ADPKKVDIAD HAKLYVSHKP GTDVMLLNAI
MQVIIKNDWH DLDYIQARVD DYSSLYDEVM KSDYRLENAA LITGVPAKQI TEMANMIGTA
TKTAVYYAMG VTQHTSGHNN VTAIANLQLL CGNIGIKGGG INPLRGQSNV QGACDMGALP
NYFSGYQKVD DPLVQVRFRE AWGIEDLPHQ IGLAATEMMQ ALSHGELKAL YVMGENPVLS
DPDQAHVLLA LKKAELLIVQ DIFLTETAAL ADVVLPANAF AEKSGHFTNT ERRIQQLQTV
VKAPGSARLD WQIIQDIANR LGADWHYRDE KQIWHEITCV TPQYRGASWQ AIDSRTRNGK
LGLQWPCPAE NHPGTPILHT TKFTRGRAKM TPVSYSLPAE PTCSEYPLTL STGRLLEQFH
TGTLTRKTPG LDELGKPKVM ISVFDADKLG INNGDMLKIS SRRGEIEICA FVTRRAQVGV
LFLPFHFVEA AANKLTINAI DPIAKIPEFK ICAVKVEKVS VTAELS
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