| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0928 |
|---|
| Symbol | |
|---|
| ID | 6115162 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 1231924 |
|---|
| End bp | 1232493 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641632411 |
|---|
| Product | peroxiredoxin |
|---|
| Protein accession | YP_001759316 |
|---|
| Protein GI | 170725290 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0450] Peroxiredoxin |
|---|
| TIGRFAM ID | [TIGR03137] peroxiredoxin |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAAT CTATCATCAA CACTGAAATC AAGCCTTTTT CTGCAACTGC ATTCCACAAG
GGCGAGTTTG TTCCAGTTTC TGAGCAAGAC CTTTTAGGTA AGTGGTCTGT TGTTTTCTTC
TACCCTGCTG ATTTCACGTT TGTATGTCCA ACAGAGCTTG GTGACATGGC TGACCATTAT
GAGAAGTTAC AATCTATGGG TGTTGAAGTT TACTCAGTAT CTACTGACAC TCACTTCACT
CACAAAGCTT GGCATGATGC TTCAGACACC ATCAACAAGA TCAACTACCC AATGATTGGT
GACCCAACTG GTACTATCAC ACGTAACTTC GGTGTGATGA TTGAGGAAGA TGGTCTAGCA
CTACGTGGTA CTTTCGTTAT TAACCCAGAA GGTGAGATCA AAGTTGCAGA GGTTCATGAC
CTAGGTATTG GCCGTAGCGC TGCAGAACTT GTTCGTAAAA TTCAAGCTGC ACAATATGTT
GCTGAGCATG ACGGTGAAGT TTGTCCAGCT GCATGGCAGC CAGGTGCTGA GACTCTAGCT
CCATCACTTG ACCTAGTCGG TAAAATTTAA
|
|---|
| Protein sequence | MNQSIINTEI KPFSATAFHK GEFVPVSEQD LLGKWSVVFF YPADFTFVCP TELGDMADHY
EKLQSMGVEV YSVSTDTHFT HKAWHDASDT INKINYPMIG DPTGTITRNF GVMIEEDGLA
LRGTFVINPE GEIKVAEVHD LGIGRSAAEL VRKIQAAQYV AEHDGEVCPA AWQPGAETLA
PSLDLVGKI
|
|---|
| |