| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0917 |
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| Symbol | |
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| ID | 6115151 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 1221833 |
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| End bp | 1222510 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641632400 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001759305 |
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| Protein GI | 170725279 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTGACT TTATCTACTC CCCTCCAACA ACCCCATGGC TTGAGATTAT CTACCAAGAC
AAAGACATTT TGGTTGTTAA CAAACCGTCA GGACTACTCT CTGTCCCAGG GCGCGACCCT
GCCCATAGAG ACAGTATCTA TGCCCGGGTT TTAGCCGAAT ACCCAAATGC TCAAGTTGTA
CACAGGCTCG ATATGGCTAC ATCTGGCATT ATCGTCCTTG CATTAAGACG AAATGCAGAA
AAAGAGTTGA AAAGACAGTT TAGAGAGAGA GAAACGAAGA AAACCTACTA CGCGCGTGTT
GCAGGGCATA TAAGATCGGA CAGCGGCAAA GTCGAGCTTC CCCTTATCTG TGATTGGCCA
AATCGGCCAA AGCAAAAGGT AGATCATAAA GTGGGTAAGC CATCACTAAC CCACTATGAA
GTGATAAGTA GGGCTAAACG CTCAACTCTA GTCAAGCTAA CCCCCATTAC AGGTCGTTCA
CACCAGCTAC GGGTACATAT GCTTGCTATA GGGCATCCAA TACTTGGTGA TAACTTCTAT
GCAGATCCGT TAGCAAAATC TTTGGCTAGC CGACTACTAT TGCATGCTCA GGAGCTGACT
ATCAAACAGC CTTACTCAGG AGAAACGTTA ACTTTTACCT GTGAAGTGCC CTTTTTAGAG
CCTGAGACAG AGCAGTGA
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| Protein sequence | MSDFIYSPPT TPWLEIIYQD KDILVVNKPS GLLSVPGRDP AHRDSIYARV LAEYPNAQVV
HRLDMATSGI IVLALRRNAE KELKRQFRER ETKKTYYARV AGHIRSDSGK VELPLICDWP
NRPKQKVDHK VGKPSLTHYE VISRAKRSTL VKLTPITGRS HQLRVHMLAI GHPILGDNFY
ADPLAKSLAS RLLLHAQELT IKQPYSGETL TFTCEVPFLE PETEQ
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