| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0913 |
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| Symbol | |
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| ID | 6115147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 1215962 |
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| End bp | 1217662 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641632396 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001759301 |
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| Protein GI | 170725275 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000952399 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAAAG ACTATATCAT GCACTCCCCT GAAAACTGCT TCACCCTCTT TACCGGTTCA
GCTCAAGCAT TAGCACTACC TGAGCGATTT ACCTATCCAT TTTACTATGA GCCTCACCCA
CTATGTTTGC TTGCAGCAAA GGAACTTCAG GCATATCTCG ACAGCCAAAC TCAGTGGCAA
CACAATTTTG GTCACCAAGG TGTTCAAGAG GGAGCGATCG GTAAAATGTT CGGTGTATTA
GTGGTCCACA ATGCTCAAGG AGAACTCGGT TATCTATCAG CATTTTCAGG TAAAGTTGCC
GACCAAAACC TACTGCCCAA CTTCGTGCCT CCGGTATTTG ACATGCTCAC AGAGGGAGGT
TTTTTCCTCA CAGAGCAAAC ACGTATTAAT CAACTCAGTG AACAATTAAG CAAGCTGAAC
ACTAACCCTA AGATTAGTGA ATACAGTAAC TTCTTAGCTG ATGAAATCGA TGCAAGTAAA
CAGCAGCTTG AAGCACAAAG ACAACATATT ATTGAGGGGC GAAAAACACG CAAAGCCCAT
AGAACGAAAG CTGAGCTCGA ACTTAATGAA ACCGACTTTA TCAAACTTCA AGCCAAGCTA
GCTAAAGAGA GTGTTCACCA TAAAAACCAG CTTAAAGCCC TAAATCTCTA TTGGGATGAG
CGAGTAGATG CTGCAAAACA GCAACTCAAC CAATTAACCG ATGAAATAGA CCAGCTTAAG
CAGGAGCGTA AAAGCTCATC AGCCAAACTA CAGAAAAAGC TATTTGAACA TTATCGATTT
TTAAATATCA AGGGTGAGCA TAGAGACTTA GGCAACATTT TCAAAGATAC CGTACATCAA
ACACCACCAG CAGGCTCCGG TGAATGTGCT GCACCTAAAC TGCTTCATTA CGCCTTTAAA
TGGGGCATGA AACCACTGGC GATGGCCGAA TTTTGGTGGG GAAGCTCGCC TAAATCAGAG
ATAAGACAAC ATAAGAACTT TTATGGTGCT TGTCAGGGAA AGTGTAAACC TATCTTAGGC
CATATGCTCG ATGGGATGGA GTTGGATAAA AACCCATTAC TCAACAATCC TGCTGTAGGT
AAAGCCATAG ATATCATCTA TCAAGATGAA GAGATGGCTA TCATCAATAA GCCTGCTGAA
TTTCTCTCTG TGCCAGGAAA AAGCATTCAA GACTCAGTAT ATCTTCGTAT GAAGACTCAG
TTTCCAGATG CAACAGGGCC ACTTATTGTT CATCGACTCG ACATGTCGAC CTCTGGATTA
ATGGTAATAG CACTGACCAA AGAGGCTAAT AAAAGCCTGC AGGCGCAATT TATCGCCCGC
ACGGTGAAGA AGCGCTATAC CGCATTGCTC ACAGGTGAGC TTAGAGAAGA CGAAGGGAGC
ATTAGCCTAC CGATGAGAGG TGACTTCGAT GACAGGCCAA GACAATTAGT TTGCTTTGAT
CATGGAAAAC CCGCCGAAAC TAAGTGGCAG GTAATTGAAC GTAAGGATGG CAAAACTAAG
GTTCACTTAT ACCCTAAAAC AGGGCGTACT CATCAGTTAA GAGTTCATAG CGCCCATGCT
CAAGGACTAA ATATGCCGAT AGTCGGTGAC GATCTCTACG GCACTAAGGC TGATAGATTA
CACCTACACG CAGAGCTGTT AGAGCTTAAT CATCCAAGTA CCAAGGAATT TATGAGTTTC
TGCATCGAAG CTGAATTTTA A
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| Protein sequence | MAKDYIMHSP ENCFTLFTGS AQALALPERF TYPFYYEPHP LCLLAAKELQ AYLDSQTQWQ
HNFGHQGVQE GAIGKMFGVL VVHNAQGELG YLSAFSGKVA DQNLLPNFVP PVFDMLTEGG
FFLTEQTRIN QLSEQLSKLN TNPKISEYSN FLADEIDASK QQLEAQRQHI IEGRKTRKAH
RTKAELELNE TDFIKLQAKL AKESVHHKNQ LKALNLYWDE RVDAAKQQLN QLTDEIDQLK
QERKSSSAKL QKKLFEHYRF LNIKGEHRDL GNIFKDTVHQ TPPAGSGECA APKLLHYAFK
WGMKPLAMAE FWWGSSPKSE IRQHKNFYGA CQGKCKPILG HMLDGMELDK NPLLNNPAVG
KAIDIIYQDE EMAIINKPAE FLSVPGKSIQ DSVYLRMKTQ FPDATGPLIV HRLDMSTSGL
MVIALTKEAN KSLQAQFIAR TVKKRYTALL TGELREDEGS ISLPMRGDFD DRPRQLVCFD
HGKPAETKWQ VIERKDGKTK VHLYPKTGRT HQLRVHSAHA QGLNMPIVGD DLYGTKADRL
HLHAELLELN HPSTKEFMSF CIEAEF
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