| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0798 |
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| Symbol | |
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| ID | 6115032 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1079909 |
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| End bp | 1081561 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641632283 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001759188 |
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| Protein GI | 170725162 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCCTG TTTATAAGGC TTTTTCTCGT CGATTTATTA TCTTATCTAT GCTGCTGGGA
TTATTACTGT CAGGGTTTTT TGGTGCCATG CTCTATCAAA AAGAGCTAGC AATTATAGAG
ACAGACTTTA AAAGAGATGT AGACGATAAA GCGATGGCGC TGGAGCGAGA GTTGCTGGCC
AATTTGGAGG TGCTTTTTGC TATTAAAAGT TTATTTAACA GCTCTGAAGA GGTGACAGCC
AACGAATTTG AAAATTTAGC CAGTGACTTT TTGGCTAGGC ATCATGATAT ACAGGCTCTG
GAGTGGGCGC CGAAGGTAAC AGGTGATAAT AGGGAGGCGT TTGAAGCAGC TCGAAGAGAG
ATCTATCCGG ATTTTGAATT TACTGAGCGC GCATCTCAAG GGAGTATGAC TAAAGCGGGT
ATACGTGATG TGTACTTCCC TGTTTATTTT GTCGAGCCGC TTAAGGGCAA TGAGGTTGCA
TTTGGCTTTG ATCTGGCATC GAATGAGAGT CGTCTTAGTA TGATAAATAG AGCAATTGAT
AGAGATCTTA CGCTTGCGAC TAAAAGCATT ACTTTAGTTC AGGAGGTGTT TGACCAAAAA
GGCTTCCTTA TTGTTATGCC TGTGTATGAA GGTGAGCCGA GTACTGTGAG TAAACGTCAG
GAGAAGTTAC AAGGCATCGT TCTAGGCGTT TACCGGATTG CCGATATTTT TGAATCGGCT
GTGAAGCATA CTGGTGCTAC CGGGATTAGA TTATTGTTGA AAGACAATAC AGGCGCCGAT
GCAGAAGAGC TTTATGCTAA CTATTCGAGC GATAAAGTGT TGGGAAGTCT ACAAAAAAGT
TTTAGCTATA GCAGATCGCT TAAACGAATA GGTGGTCGGC AATGGACCTT GATTGCAACC
CCAAGCCAAG GATATATTGC TGAGCGCCAA AGTTTATTGC CTTTTTTCGT GTGTGCGTTT
GGCTCTATTT TTGTTTTAGT CGGTGGTGGG TATATCTTTC TGGCTACTGA GCACTCCACT
ATGATTCGCG AAGAAGCTGT AGAGAGAAAT AGAGAGTTAG ATGAAGCTAA ATTAGCGTTG
GAGGAACTCT CTTTTACGGA CGGTCTGACT GGAATTGCCA ATCGGCAATG CTTTGATATT
CGCTTCGAAG AGGAGTGGTT AAGGGCGTTA CGGGATGGAA CTTCACTGTC GCTAATCATG
GTGGATCTGG ATAATTTTAG GCTTTTCAAT AACACCTATG GCTATATCGG TGGGGATCAG
TGTTTACGTG ATATTGCCAA TAAACTCGCG CTGACCACGA ACCGAACCAC AGACTTGGTG
GCACGCTACG ATGCTGATCA ATTTGTTATC TTGCTGCCCA ATACCGATGA ACCTGTGCTT
TTGGCTGATA AGTGCCGCAT CAATATTGAA AAGCTTCATA TCCCTTATCA AGCCTCTTCG
GTTTCAGATT ATATGACTGT CAGTGTAGGG GTTGCGAGTA TGATCCCGAC TAAACATAGG
TCACAGGCTG ATTTTATGGC CAATGTTAAG GAGTTGCTGG CTCAAGCTAA AGAGCTAGGT
AAAAATCGTG TGGGTATCGC CCGCGATATT TTAGCGGCGA ATAGAGGAGA TATACTTAAA
TTTCAATACT CTCAGGGTCG TTCAACTGAG TGA
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| Protein sequence | MMPVYKAFSR RFIILSMLLG LLLSGFFGAM LYQKELAIIE TDFKRDVDDK AMALERELLA
NLEVLFAIKS LFNSSEEVTA NEFENLASDF LARHHDIQAL EWAPKVTGDN REAFEAARRE
IYPDFEFTER ASQGSMTKAG IRDVYFPVYF VEPLKGNEVA FGFDLASNES RLSMINRAID
RDLTLATKSI TLVQEVFDQK GFLIVMPVYE GEPSTVSKRQ EKLQGIVLGV YRIADIFESA
VKHTGATGIR LLLKDNTGAD AEELYANYSS DKVLGSLQKS FSYSRSLKRI GGRQWTLIAT
PSQGYIAERQ SLLPFFVCAF GSIFVLVGGG YIFLATEHST MIREEAVERN RELDEAKLAL
EELSFTDGLT GIANRQCFDI RFEEEWLRAL RDGTSLSLIM VDLDNFRLFN NTYGYIGGDQ
CLRDIANKLA LTTNRTTDLV ARYDADQFVI LLPNTDEPVL LADKCRINIE KLHIPYQASS
VSDYMTVSVG VASMIPTKHR SQADFMANVK ELLAQAKELG KNRVGIARDI LAANRGDILK
FQYSQGRSTE
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