Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0749 |
Symbol | |
ID | 6114983 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 1023045 |
End bp | 1024355 |
Gene Length | 1311 bp |
Protein Length | 436 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641632234 |
Product | type II and III secretion system protein |
Protein accession | YP_001759139 |
Protein GI | 170725113 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACTCAA GAAAGTTAAT CGCAATTATT TGGGCATGTA TCTTCATCCC GCTTGTTAGC TACGCACATA ATAACACCCC ACTTAAGCTC TACATGGGGG CTGTAGAACT TTATAACGCC AAAAATGTTG AACGAATTGT AGTGGGTAAC GGCAAAGTAC TCAGTGCTAA AGTTATCGAT GATAAAGGTG TTTTACTGAT CGCTGAGTCT CCGGGAAATA CCGACGTACA GCTGTGGCAA AAAGATGGCA AGCTGATCAA GCTGAGCATC TCTGTCACGC CAGATAACTC ACTGAAAACC ACTGATACCA TAAAAAAGAT GTTGGCGGCT TTCCCTTCGA TTAAGGTCAC AGAAAATGAT GGCTTGATCA TAGTTCAAGG TGAGGCAGAC CTCTCCCAAA AGGAGCAGTT AGAGACAATA ATAGAAGCCG ACCCAAATGT GGTCTCCTTA ATCAAATACC TTAAGTTTGC CAAGACTATG GCTCCCATGA TTAAGATGCA GGTTAAGATT GTTGAGTTTA ATAAATCAAC CCTGAATAAC ATAGGTATCA AATGGGAATC ATCCATGGCT GGGCCTGCAT ATGGCGCGGC TAAAGCTTTC TCCGCTAATC CCATCTTCAG CGTATCCTCA CCGGGGCAGT ATTCAGAAAC AATAACGAGT GCAATCACCG ATAGCATTGG CGTCTTAGAT ACCCGAGGGT GGAACTATTT CGGCATAGTG ACCGGCATAG GCTCGCAGAT ACAGCTGCTA TCAGAAAAGG GCGATGCCCG CATGCTGGCT GAACCCAACC TCACCACTCG CAGTGGTGAA TCGGCTAACT TTCTCGCCGG TGGTGAATTC CCTATTCGCA GTGTCAGCGG CCTTGGCGCA GTTGATGTTG AGTACAAAGA GTACGGCATC AAGCTCGATA TCGAGCCTGT AGTCGATGAC GATCTCAATA TTGTCAGTAG AGTGATGGCC GAAGTTAGCT CTATCGACCC TTCAGTCGCT GTCGACGGTA TCCCAGGTAT GCTCACTAGG CGCACTGAGT CTGTCATCAA CGTTAAGAAT AATGAAACCA TCGTTATCTC GGGATTAGTT AACAGTGAGA TGTCAAAAAT CGTCAACAAG TTCCCTCTGC TAGGTGATAT CCCCATTTTA GGTGAACTGT TTAAGTCCAG AGACTTTAAG GATAACAAGA GTGAGCTGGT TATCTTTGTC ACCCCAACTG TCGTATACCC AGGTGAGGAG AGCCACGATA AGCAGCTAGA GCGCGGGTTA GAGATGGCTG AAGAAACCAA TAAGCTTGAA GCTTTTTATA TTCTGGATTA G
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Protein sequence | MNSRKLIAII WACIFIPLVS YAHNNTPLKL YMGAVELYNA KNVERIVVGN GKVLSAKVID DKGVLLIAES PGNTDVQLWQ KDGKLIKLSI SVTPDNSLKT TDTIKKMLAA FPSIKVTEND GLIIVQGEAD LSQKEQLETI IEADPNVVSL IKYLKFAKTM APMIKMQVKI VEFNKSTLNN IGIKWESSMA GPAYGAAKAF SANPIFSVSS PGQYSETITS AITDSIGVLD TRGWNYFGIV TGIGSQIQLL SEKGDARMLA EPNLTTRSGE SANFLAGGEF PIRSVSGLGA VDVEYKEYGI KLDIEPVVDD DLNIVSRVMA EVSSIDPSVA VDGIPGMLTR RTESVINVKN NETIVISGLV NSEMSKIVNK FPLLGDIPIL GELFKSRDFK DNKSELVIFV TPTVVYPGEE SHDKQLERGL EMAEETNKLE AFYILD
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