| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0724 |
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| Symbol | |
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| ID | 6114958 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 989868 |
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| End bp | 991598 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641632209 |
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| Product | spermidine synthase |
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| Protein accession | YP_001759114 |
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| Protein GI | 170725088 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0105401 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000291342 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAGTGAAG TAACTGAACC AGCACTGGCT GGAAACCCCA AAGAGAGAAA ATTAAGTTGG
TTTGACGATA CGCTGCTACT TGGCATTATG GCGGTTCTGG CTGGGTGTGG CTTAATCTAT
GAGTATCTAC TCTCCCATTA TGCAGGGCGC ATTCTCGGCG CACTAGAAGC CGCCATCTAC
ACCATGATAG GCTTGATGAT CGTCTCCATG GGGATTGGGG CTTTTGCTGC CCGTAAGATT
CGCTGCGCCT ATACAGGTTT TGCAGTACTT GAGCTCAGTG TCGCCCTGTG TGGATCACTG
GCCATCTTGA TCACCGCCGC AATTATCGGT TTCGGCCAAC AGCTTCCTCT TATCATCGCC
AGCACTTTGG GCCTGCCTCC AGATCTTCTA CCTGAAGGGG GTTTTATTGG TGTACTGCAA
AAGCTCAGTG AGTACCTTCC CTATGTATGG GGCGTAATAT TGGGTTTGAT GATCGGCATG
GAGATCCCTC TCATTGCTCG TGTTCGCCAA TCCCTGTGCG ATGAGCACCT GATGCACAAT
GCGGGCACCA TATATGGCGC CGACTATGTA GGTGCAGGTA TAGGGGCAGC TATCTGGGTC
AGCTTTATGC TTGCCATCGA TATTCAGTTG GCAGCGGCAT TAACCGCTAG CTTTAACTTG
CTAGCTGGCT TTATTTTTAT CTGGCGTTTC TGGGATCGAA TTCGATTCGT AAAAATCTTG
CTTGTGGGGC ATTTTATCGC CTCAGGTATA CTGCTACTAC TGGCTTGGCA CGGACCCAGC
TGGGAGCAAA ATTTCAATAA CTTGCTCTAT AAAGACAATG TTATCTACGC CAAATCGACC
CGTTTTCAGC AACTCACGTT CACCGAACGT TTAAGAGGCA GCGGTATCCC TCCTGTTTAT
TCTCTCTATA TTAATGGCCG CCTGCAGTTC TCCAGTGAAG ATGAGCATAT TTATCACGCC
TTTTTGGTTC ACCCAACCAT GGAAGCCAGC GCTCGTCACA ATAAGGTATT GATCATTGGC
GGCGGAGACG GACTAGGGCT AAAACAGGTG CTTAAGTGGC AACCTGACTC TGTAACTTTA
ATGGATCTCG ACAAAGATCT GCTGGCGCTT TTCACCTCCC ATGAGGCCGA TATGCCAGCG
CGTTTGAGTG ACACATTACT GAGATTAAAT GGTGATGCCC TTAACGATCC TAGAGTCAAT
GTGATTGTCG ATGATGCTTT TAATGGGGTG GATAAACTCC TTAGAAAAGG TGAGAAGTTT
GATGCCATCA TTGTCGATCT GCCTGACCCG AGTCATCCTG ATCTAAACAA GCTATATTCA
GATCTCTTTT ATAAAAAATT AAAGGAACTC TTGAGTGCAG ATGGTGCTCT AACCGTACAG
TCAACCTCTC CTTACCATGC ACCTAAGGCA TTTATTTCAA TTGGAAAAAC CTTAGCACTA
GCGGGTTTCG ATGTGAATCA ATATCATCAC AACGTCCCCA GTTTTGGAGA GTGGGGCTGG
AGCATCGCCA CCGCATCTGG TAAAAATGCT AGAGCAAGGT TGAACGAAAT AACCCAACTA
TCAGTTGAGG ATGACTGGTT AACCCCAGGT CTGATAAAAG GGTCTTTTGA GTTCCCAGCC
AACTTCTATC AAGAGTTAGA GAATATAGAA GCGAATCGAA TTGGCTCCAC CCAGTTATAC
CAGTACCACC AACAAGCTTG GTCTGAGAAT CAGGGAGTTA CACTATTCTG A
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| Protein sequence | MSEVTEPALA GNPKERKLSW FDDTLLLGIM AVLAGCGLIY EYLLSHYAGR ILGALEAAIY
TMIGLMIVSM GIGAFAARKI RCAYTGFAVL ELSVALCGSL AILITAAIIG FGQQLPLIIA
STLGLPPDLL PEGGFIGVLQ KLSEYLPYVW GVILGLMIGM EIPLIARVRQ SLCDEHLMHN
AGTIYGADYV GAGIGAAIWV SFMLAIDIQL AAALTASFNL LAGFIFIWRF WDRIRFVKIL
LVGHFIASGI LLLLAWHGPS WEQNFNNLLY KDNVIYAKST RFQQLTFTER LRGSGIPPVY
SLYINGRLQF SSEDEHIYHA FLVHPTMEAS ARHNKVLIIG GGDGLGLKQV LKWQPDSVTL
MDLDKDLLAL FTSHEADMPA RLSDTLLRLN GDALNDPRVN VIVDDAFNGV DKLLRKGEKF
DAIIVDLPDP SHPDLNKLYS DLFYKKLKEL LSADGALTVQ STSPYHAPKA FISIGKTLAL
AGFDVNQYHH NVPSFGEWGW SIATASGKNA RARLNEITQL SVEDDWLTPG LIKGSFEFPA
NFYQELENIE ANRIGSTQLY QYHQQAWSEN QGVTLF
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