| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0557 |
|---|
| Symbol | |
|---|
| ID | 6114791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 783046 |
|---|
| End bp | 785370 |
|---|
| Gene Length | 2325 bp |
|---|
| Protein Length | 774 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641632043 |
|---|
| Product | peptidase M4 thermolysin |
|---|
| Protein accession | YP_001758948 |
|---|
| Protein GI | 170724922 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3227] Zinc metalloprotease (elastase) |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.25076 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCTAA ATAATAAGAT CTCATTAGTT TTCCTCGCTA TTTCAGCGGC GTTAAGCTCT
CAAGCCATGG CAGCGAATAG TGTCGATGTT TCAAAACTAA AAACTATTCA CTCTAGTAAC
GATATCAACC GTGTTCTCCC CCTTGAGAAA GGCAGCGACT TTAAAGTCGC CAAAGAGGTA
AAGCTGGGTA AGATGGGCGT TAAACAGCGT CTGCAGCAAT ACTTCTATGG TATTCCTGTA
TTTGGCTACT CCATCAGTTC AGATGTGTCA TCCATGGGGA TCTATTCTGA CTTGAAAGGC
AATATGTTGG GTAATATTGC CCAACCTGAG AGCTTTGTTA ATGCCAAGCT CTCACCTCAA
CAAGCTATCG CAGCTTCAAT AAAAGGCAAA AATGGGCTGG CAAAGAGTGC TAAGCGCCAT
AATGAACAAG CAGATCTTTG GGTATATCAA GATGATGCCC AGCAGCCGCG TTTAGTCTAT
ATCACCTCCT ATGTTGAATA TGGTGACAAA CCTACTCGCC CCTTTACTAT TGTTGATGCT
AAGACAGGTG CAGTGCTTAA GCGTTGGGAT GGTTTAGCTC ATGCTGAGGT GGGCACAGGA
CCTGGTGGTA ATGTTAAAGT TGGTCAATAT GAGTACGGGA CTGACTTTGG TTACATGGAT
GTGATTGAAG ATGGCGCGAG CTGTACCATG GACTCGGCAA ATGTCAAAAC TGTTAACCTA
AACCATGGTA CAAGCGGCAG CACTGCGTTT GAGTATGATT GCCCACGCAA TACGGTGAAA
GAGATTAACG GCGCTTATGC ACCGCTCAAT GATGCCCACT TCTTCGGTAA TGTTATCTAT
AACATGTACA GTGATTGGTA TGACACTGCG CCATTGACCT TTAAGCTTAC CATGCGTGTA
CATTACGGTA ATAACTATGA GAATGCCTTC TGGGATGGCT CTGCCATGAC ATTTGGTGAC
GGTGCTACTA CCTTCCACCC ATTAGTGAGT CTGGATGTAT CAGCTCACGA GGTGAGTCAT
GGATTCACAG AGCAGAACTC TAATCTAGTG TACGCCAATC GCTCAGGTGG CATGAATGAA
GCTTTCTCTG ATATGGCCGG TGAAGCAGCT GAGTTCTTTA TGCATGGCAC TAACGATTGG
TTAGTGGGTG CGGATATTTT CAAGGCTGAT GGTGCTCTGC GTTATATGGA AGATCCAACG
CTAGATGGTC GCTCTATTGG TGATGCCGCT GATTATTATG ATGGAATGGA TGTTCATTTT
AGTTCAGGTG TCTTTAACAA GGCATTTTAC ACTCTAGCTA ATACCGACGG TTGGAACACT
CGCACCGCAT TTCAGGTGAT GGTGGTAGCT AACCAAGTTT ACTGGACGGC CAATAGTCAT
TTCTGGGATG GCGCTTGTGG CGTTAAAAGT GCAGCTGAAG ACCTAGGCTA TAGCACTGCA
GATGTTGAAG CTGCCTTCAT GGCGGTGGGT GTTGAGGCTT GTGTAGAACC TGAGCCAGAG
CCGATTCCTG AGCCTACAGT GCTAGAAAAT GGGGTATCGA TTGAGACCTC TGGTAATGCG
GGTAGCAAAG CCTATTACAC ATTAGCAGTT CCTGGCGATG CGACAGAGCT GGGCTTCGTT
ACCTCTGGTG GAACGGGCGA TGCAGATCTG TATGTGAGAT TTGGTGAAGC GCCAACACTA
GCAGATTATG ATTGCCGTCC TTATGCCAAT GGTAATGAGG AGTCTTGTCC TGTTGATACA
GCGCAAGAGG GGACTTACTG GGTGATGTTA CATGGCTACT CTGCTTATGA TGGTATGTCA
CTTGTGGGGA GCTATGAAGG TACGGATGTA CCGAATGAAG CACCTGTCGC TGGTTTTGAT
GCGAGCTTTA ATTTAGGTCA GGCAAGCTTT ACCAGCACAA GTAGTGACAG TGATGGCACT
ATTGTAGACT GGAGTTGGAA CTTCGGTGAT GGCGGAACTG GCAGTGGTGA AACAGCCTCT
TACGAGTATG CGGCTTCTGG CAGTTATGAT GTGAGCTTAA CGGTAACCGA TGATGATGGC
GCAACCGCAG TTTCGACGCA GACCTTTGCT GTTGAAGTTG ATGAGGTGAC TGAGTTTGAC
CTAACGGTTA AAGCAGCGAA TAAATCTCGT CGTGGCAGTA TCCGTGTCAG ACTTATCTGG
GACAGTGTAG GCTCTTTCAC TGTTTTCCGT GATGGTGTTG AGGTAGGCAC TACCAATAAC
AGTAGTTACA TAGATCGCTT TAGAGACGCT GATGGTACAA GCTTCAGCTA TCAGGTATGT
GGTGCTAATG GAAGCTGCTC AGATGTTGAA GTGGTGAACT TTTAG
|
|---|
| Protein sequence | MMLNNKISLV FLAISAALSS QAMAANSVDV SKLKTIHSSN DINRVLPLEK GSDFKVAKEV
KLGKMGVKQR LQQYFYGIPV FGYSISSDVS SMGIYSDLKG NMLGNIAQPE SFVNAKLSPQ
QAIAASIKGK NGLAKSAKRH NEQADLWVYQ DDAQQPRLVY ITSYVEYGDK PTRPFTIVDA
KTGAVLKRWD GLAHAEVGTG PGGNVKVGQY EYGTDFGYMD VIEDGASCTM DSANVKTVNL
NHGTSGSTAF EYDCPRNTVK EINGAYAPLN DAHFFGNVIY NMYSDWYDTA PLTFKLTMRV
HYGNNYENAF WDGSAMTFGD GATTFHPLVS LDVSAHEVSH GFTEQNSNLV YANRSGGMNE
AFSDMAGEAA EFFMHGTNDW LVGADIFKAD GALRYMEDPT LDGRSIGDAA DYYDGMDVHF
SSGVFNKAFY TLANTDGWNT RTAFQVMVVA NQVYWTANSH FWDGACGVKS AAEDLGYSTA
DVEAAFMAVG VEACVEPEPE PIPEPTVLEN GVSIETSGNA GSKAYYTLAV PGDATELGFV
TSGGTGDADL YVRFGEAPTL ADYDCRPYAN GNEESCPVDT AQEGTYWVML HGYSAYDGMS
LVGSYEGTDV PNEAPVAGFD ASFNLGQASF TSTSSDSDGT IVDWSWNFGD GGTGSGETAS
YEYAASGSYD VSLTVTDDDG ATAVSTQTFA VEVDEVTEFD LTVKAANKSR RGSIRVRLIW
DSVGSFTVFR DGVEVGTTNN SSYIDRFRDA DGTSFSYQVC GANGSCSDVE VVNF
|
|---|
| |