| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0519 |
|---|
| Symbol | |
|---|
| ID | 6114753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 735305 |
|---|
| End bp | 737200 |
|---|
| Gene Length | 1896 bp |
|---|
| Protein Length | 631 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641632006 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001758911 |
|---|
| Protein GI | 170724885 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.447681 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGA TAAACCTCAT TTTAGTCATC TTGACTCTAC TCCTATCTTA TCCGCTCAAA
TCGGAAACCT TACTTGCGCT AAGTGGAGAT TCAGATAAAA GCTTAAGGAT CTCCCCTTGG
CTTTATTATA CCTTTGAGTC TGAAAGTGAA GGTATTGAGC AGATAAGAAA GTTCAGTACA
ACGCAGTGGG ATAGGTTATC CCTAGGCGAT AATAACCACA TTGCGCTTAA ACCTTTCTGG
ATAAAGTTTA GCATTTATAA TGCAGAACCT CAGACAATCA ACAGGCTGCT CTCTCTGGGA
AATCCCCATA TAGATAAGCT AGATATCTAC CACTTTGCTC AGAATGTACT GGTCAATCAC
ACCCAAGTGG GCGATACCTT CCCTTTCCAT CAAAGGCCGG TGATCAACAA CCTGTTTATC
TACCCATTTG AACTTGCACC AGAGATAGTG AACACTTTCT ACATTAGGGT AGATACCGAG
GGGAGTGCTA ACTTGCCACT GAGCTTGTGG TCCCCTAATG CCTTTGCCCA GCACACAGAA
GCCAGTGCTC TATCTAAAGG TTTTCAGCTT GGTGCCCTTG CTGCTATTGG TTTCTTTAGC
CTCTGCATTG CCATTACATC ACGCTCGTTC AGCTACAGCT ACTATGCAGG TTACGTCCTA
TCTGTCACTC TGTTAGTCGC AACCCTGCAG GGGCTAGCTT TTAGGTTTAT CTGGCCAGAC
TGGCCGATGT TGCAGCACTT GATGATCACC ACACTTGTGC CTCTGAGTAT CTTTTTTGCC
ATCTTGTTTA CAGAGAAGGT GCTGCTGCTT AAGTATCACA GTTTGCCTAT GCTCAGGTTA
TGTCGTTACA GCTCTGCAGC TGCCCTACTG CTAGTGTTTA TTACGCCTAT GCTGGATTAC
TCTCAGGCGC AATATATCAA TATTTTCTCA GTCCTTTTAG TGACCACACT TCTGATGGGA
ATAGCTTCCA TACTGGCTAT CAGAGGACAT AAACTGGCTC GGCTCTACAC ACTAGCCTGG
AGTGGTATGT TGATTGGCTC CTTTATTACA GGCTCCTCCT ACTTAGGATT AATCACATTA
CCGATTAAGC ACTTAACTCC GCTAATGGTT GGTCTCACCT TCGAGATCAT CTTTATGGCC
AGTATTCTCG CGATTCGTTA TAACGATGAG CGAAAATTAA AATTGCAGAC ACAACAAGAA
GCGCTACTGC AATCTCAAAG AATACGCAAA ACCAAAGAGG AAGCCCTGCT TATCGAGGCT
AACAGCAACG AGAAGCTTGA GCAGATGGTA CAGGAGCGAA CCTTAGAGTT AGAGATCGCA
CTTAGGGAAC TTAACGAGGC TAATCAAAAA CTCACTGAGC AGGCCACTAC CGATAGTCTT
ACTGGTGTTA AGAACCGCGC CGCTTTCGAT AAACGTCTTC AAGCCGAAGG AAGATTAAGC
CGAAGACAGC AGACCCCAAT GGCTATTTTG ATGTTAGATA TAGACCGCTT TAAGTCGATT
AATGATAATT ACGGTCACTT GGCTGGCGAT CAGATCTTAA GATTTATCGC TCAAACACTT
AAAGAAAAAT TAAAACGTCC AGCGGATCTG GTGTCACGTT TTGGCGGTGA AGAGTTTGCT
ATTATATTGC CAAACACAGA TCAGCCAGGT GCTGTACAGG TTGCTGAGCA GATACGAAAA
ACCATTTATG ATCTGCCCAT TAGCTGGGAA AATATCGATA TTCCACTCAC CATTAGTATC
GGTGTTAGTT CAGAGATAAT GCAATCTGAA ACTCAGCCAA CCAAGTTGTT AGAACAAGCA
GATAAAGCAC TTTATCGTGC AAAAAATGAT GGGCGTAACC GTGTCATGGT TTATACGCCT
GAGCCTCAAA AAGAGATAGA CCACACCCAG TCTTGA
|
|---|
| Protein sequence | MKQINLILVI LTLLLSYPLK SETLLALSGD SDKSLRISPW LYYTFESESE GIEQIRKFST
TQWDRLSLGD NNHIALKPFW IKFSIYNAEP QTINRLLSLG NPHIDKLDIY HFAQNVLVNH
TQVGDTFPFH QRPVINNLFI YPFELAPEIV NTFYIRVDTE GSANLPLSLW SPNAFAQHTE
ASALSKGFQL GALAAIGFFS LCIAITSRSF SYSYYAGYVL SVTLLVATLQ GLAFRFIWPD
WPMLQHLMIT TLVPLSIFFA ILFTEKVLLL KYHSLPMLRL CRYSSAAALL LVFITPMLDY
SQAQYINIFS VLLVTTLLMG IASILAIRGH KLARLYTLAW SGMLIGSFIT GSSYLGLITL
PIKHLTPLMV GLTFEIIFMA SILAIRYNDE RKLKLQTQQE ALLQSQRIRK TKEEALLIEA
NSNEKLEQMV QERTLELEIA LRELNEANQK LTEQATTDSL TGVKNRAAFD KRLQAEGRLS
RRQQTPMAIL MLDIDRFKSI NDNYGHLAGD QILRFIAQTL KEKLKRPADL VSRFGGEEFA
IILPNTDQPG AVQVAEQIRK TIYDLPISWE NIDIPLTISI GVSSEIMQSE TQPTKLLEQA
DKALYRAKND GRNRVMVYTP EPQKEIDHTQ S
|
|---|
| |