| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0505 |
|---|
| Symbol | |
|---|
| ID | 6114739 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 717939 |
|---|
| End bp | 718907 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641631992 |
|---|
| Product | NifR3 family TIM-barrel protein |
|---|
| Protein accession | YP_001758897 |
|---|
| Protein GI | 170724871 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000101066 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0204748 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATTG GACCCTATCA ACTGAAAAAT CAGCTGATCG TGGCACCAAT GGCAGGTGTC
ACAGACCAAG CCTTTAGAAA CCTTTGTCTT CGATATGGCG CTGCCATGGC GGTGTCAGAG
ATGCTTTCAT CTAACCCCGA TGTTTGGGAT ACAGATAAAA GCCGCCAGCG GATGCTTCAT
GCTGGTGAAG ATGGGATACG ATCAGTACAA ATTGCAGGTG CAGATCCAGA ATTGATGGCC
AACGCCGCCG TTGTCAACGT ACAACAAGGG GCGCAGATCA TCGATATCAA TATGGGTTGT
CCTGCAAAGA AAGTGAATAG AAAGCTAGCG GGTTCAGCAC TACTACAAGA CCCAGTGCAG
GTAAAAGCAA TTTTACAAGC CGTGGTCGCT GCAGTTGATG TCCCCGTGAC ACTGAAAATT
CGAACTGGAT GGGCCCCGGA GCACAGGAAC GGTGTTCAAA TCGCCCAGAT AGCCGAAGAT
TGTGGTATCG CCGCGTTAGC CGTACATGGC CGAACTCGGC AGTGCATGTA TAAAGGTAAT
GCTGAATACG ACACGATTAA AGCTATTAAA AAGAATGTCT CGATCCCTGT TGTAGCGAAC
GGAGACATCA CCACCCCGCA GAAGGCGCAA TTTGTGCTTG AACATACGGG AGTTGATGCT
CTTATGATAG GTCGAGGTGC CCAAGGAAGG CCTTGGATTT TCCGAGAGAT CCAACATTAC
CTGGAAACGG GTAACATGCT AGCGCCTGTA GAGGTGGATG AAAAGCGTCA AGTGATGCTG
GAACACCTTA AAAACTTATA CTCACTTTAC GGTGAATATA AGGGGATCCG TTTCGCTAGA
AAGCATGTTG GATGGTATTT GGACCAAGAT GAACAGCGTC CATTCCGCGC CGAATTTAAT
CGGCTGGAAA CTGTTGAAGA ACAAGGTTCC ATGGTGGAAC GCTATTTTGA CGAAATTGCA
CAGAATTAA
|
|---|
| Protein sequence | MQIGPYQLKN QLIVAPMAGV TDQAFRNLCL RYGAAMAVSE MLSSNPDVWD TDKSRQRMLH
AGEDGIRSVQ IAGADPELMA NAAVVNVQQG AQIIDINMGC PAKKVNRKLA GSALLQDPVQ
VKAILQAVVA AVDVPVTLKI RTGWAPEHRN GVQIAQIAED CGIAALAVHG RTRQCMYKGN
AEYDTIKAIK KNVSIPVVAN GDITTPQKAQ FVLEHTGVDA LMIGRGAQGR PWIFREIQHY
LETGNMLAPV EVDEKRQVML EHLKNLYSLY GEYKGIRFAR KHVGWYLDQD EQRPFRAEFN
RLETVEEQGS MVERYFDEIA QN
|
|---|
| |