| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0487 |
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| Symbol | dapF |
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| ID | 6114721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 675694 |
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| End bp | 676533 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641631975 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001758880 |
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| Protein GI | 170724854 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.111776 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATTCATT TCGCTAAGAT GCATGGCTTA GGCAATGATT TTATGGTGGT TGATGGTGTT
ACGCAGAATG TATTTTTTTC GCCTGAACAG ATCAAACGTC TGGCTGATAG AAATTTTGGC
GTAGGTTTCG ATCAACTGCT TTTGGTAGAG CCTCCCTACG ATCCCGATCT CGATTTTCAC
TATCGTATCT TTAACGCCGA CGGTGGAGAG GTTGAGCAGT GTGGCAATGG CGCTCGCTGT
TTTGCCCGGT TTGTTCGAAA TAAAGGACTA ACCAACAAGC ATAAGATTAA GGTGAGCACC
TCAAACGGTA AGATCACCTT ACGATTAGAG CGCGATGGTA ATGTGACGGT CAATATGGGC
GTGCCTGTAT TGGATCCAAG CAAGATCCCC TTTAATGCGA AACGAGTTGA GAAAACTTAC
CTGCTTCAGA CCAGTAGTTC CCACGCGATG GAGACCTTCT TGTGTGGTGC AATATCGATG
GGAAATCCTC ATTGTGTCTT GGAAGTCGAG GATATCGAAC ATGCTGAAGT CGAGCGCATC
GGTGCTCTTT TAACCCAAAA TGAGCGTTTT CCTAAGGGCG TTAACGTTGG CTTTATGCAG
GTCATTGATG CCGGGCATAT CAAGCTAAGA GTCTATGAGC GCGGCGCGGC TGAAACTCTC
GCTTGTGGCA CTGGAGCTTG CGCTGCTGCG GCTGTTGGCC AGTTGCAGGG GAAATTGAAT
AAAATGGTTC GTGTTGATCT TCCCGGTGGT ACACTGACGA TTAACTGGGA AGGTGAGGGG
AATCCTTTGT GGATGACTGG GCCTGCCGAA CATGTATATG ATGGACAGAT ACCTCAATGA
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| Protein sequence | MIHFAKMHGL GNDFMVVDGV TQNVFFSPEQ IKRLADRNFG VGFDQLLLVE PPYDPDLDFH
YRIFNADGGE VEQCGNGARC FARFVRNKGL TNKHKIKVST SNGKITLRLE RDGNVTVNMG
VPVLDPSKIP FNAKRVEKTY LLQTSSSHAM ETFLCGAISM GNPHCVLEVE DIEHAEVERI
GALLTQNERF PKGVNVGFMQ VIDAGHIKLR VYERGAAETL ACGTGACAAA AVGQLQGKLN
KMVRVDLPGG TLTINWEGEG NPLWMTGPAE HVYDGQIPQ
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