Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0476 |
Symbol | |
ID | 6114710 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 595085 |
End bp | 597265 |
Gene Length | 2181 bp |
Protein Length | 726 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641631964 |
Product | type I secretion system ATPase |
Protein accession | YP_001758869 |
Protein GI | 170724843 |
COG category | [V] Defense mechanisms |
COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCGACAT CAGTTCCTAA AAAAACTGAG CAATGGACAG TGTCAGCCTC ACAGCGAGTG ACAGTCGATC CATTGCTAGA CAGTTTAGTA TTATTGACCG AATACTTCGG TAGTCCCTGC TCCAGCGAAT CGATGGCGGC AGGTCTACCT TTGTCCGGTA GTGTACTTAC TCCAGATCTG GTTCCCCAAG CTGCAGGGAG GGCAGGCTTA GCAGCCAAGC TCACTCAAAA AGGCTTGAAT CAGATCTCGC CTATATTTTT ACCTTGTATC TTGCTACTTA AAGATAAAAA GGCATGCTTA CTCCGTGAGT TAGATGTAGA GAAAGACAAA GCTGTTATTC AACTACCAGA AACTGGTGGT GAACAGGTAC TGACACTTGA AGATTTAGAG GCGATCTATG TTGGCTATCT TTTTCTTGTA AAGCAGCAGT ACCGTGGTGA CATGGGCTTT GATGTTCATC AACATGACAG CACAACACAT TGGTTAGTGC AGACCCTTAG GGACTCTGCA CCTATCTATC GAGATGCGCT ACTGGCATCG GTTTTAGTTA ACCTATTTGC GTTAGTGTCC CCACTCTTTA TCATGAATGT GTATGACAAA GTTGTGCCAA ACTTAGCTTT CTCATCACTT TGGGTACTCG CCATAGGCGC GAGTGTCGCT TACATATTTG ATCTAATACT AAGACAGCTT CGATCCTACC TTATTGATGT GGCTGGGAAA AAAGTTGATA TCATTGTTTC ATCCAGGCTA TTTGCTAAAG CGATAGGTAT ACCGCTAGAG AAGCGCTCCC CTAGCGTCGG TGGAATGGCA CGGCAACTGG GCGAATTTGA CAGCATTAGA GAGATATTAA CCTCGGCAAC CATCACTACT TTAGTCGATC TCCCTTTTGC CATATTTTTC ATGATCATCA TTTACGTTGT AGCCGGTGAT CTGGCCGTAA TACCTCTGAT AGGCAGTATG ATCATTATTG GTTATACACT AGTCATGCAA CCTAAGTTAA AAGCGGCTAT TGAAGAGAGT AATAAGTTTT CTAGCTTAAA ACACGGACAC CTTATTGAGT CTTTAGCGTC TCTAGAATCA ATTAAATCTA GTGGTGCAGA GGGTTTAGTG CAAAAAAGTT GGCAGCAGAT GATTGGTCAT ACAGCCAATT GGCAGCTTAA ATCTAAAAAG ATCTCGACAG CAGTCACTAA CTTAGCCAAT TTTGTCGTGC AACTTTCTGT TGTTTGTGTC GTGATTTTAG GGGTTTACCG AGTTGCCGAT AACGAAATAT CTATGGGTGG GATTATTGCG GCGGTGATCC TGTCCAGCAG AGCTATCTCC CCTATGGCGC AGCTAGCAGG CCTTATGACT CGTGGTAACC ACACAGCAAG TGCACTACGC CAACTTAACG AGATCATGAC TCAAGAAGAT GAGTTTGAAA ATAAAGGTCA TCTTGTAAGC CGTCAACGCT TGCAGGGTAA AATCAGTGCA GACCATATTA GCTTCGCGTA TCCTGGCTCT GAAAAGCCAG TACTGCACCC AATGTCTATC AATATTGAGC CCGGAGAGCG TATTGCCATT ATTGGCCGCA ATGGTTCAGG AAAGAGCACA TTGGCTAAAA TGCTTGTGGG CCTCTACCAA CCAACAAAAG GCAGTCTGCG TTATGACGGT CTTGACTCAG CCCAGATCCA CCCTACAGAT TTAAGACGTA ATTTTGGTTA CTTGCCTCAA GATATCACTC TCTTTCACGG CACTATCAGG GACAATATCC TCTTCGGCAC TCGTCAAGTC ACAGAACATC AATTGATCAG AGCCGTTCAA CTCTCTGGGA TCAGTCAGTT TACCGATTTA GACAGCGAAG GTTTAGATCA GCAAGTAGGT GAAGGCGGCC AGTCACTCTC ACGTGGGCAG AGACAGACCG TAGCCCTCGC TAGAGCAACC CTAAACGATC CTCCAGTGCT CTTAATGGAT GAACCTAGTG CGAGCTTAGA TGCTAGAGCA GAGAAGCAGT TTATTCATGC AATGCAAAAT GTAACCAGAG ACAGAACCTT GCTGCTTATT ACCCATAAGA TGCACCTGTT AAAACTGGTT GACCGAATAG TCGTGTTAGA CAGAGGACAT GTGGTCATCG ATGGACCCAA AGCGGAAGTG CTAGACAAGC TAAGTAAAGG TTTGCTTGCC GGAGGGCAAA CCAATGAGTA A
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Protein sequence | MSTSVPKKTE QWTVSASQRV TVDPLLDSLV LLTEYFGSPC SSESMAAGLP LSGSVLTPDL VPQAAGRAGL AAKLTQKGLN QISPIFLPCI LLLKDKKACL LRELDVEKDK AVIQLPETGG EQVLTLEDLE AIYVGYLFLV KQQYRGDMGF DVHQHDSTTH WLVQTLRDSA PIYRDALLAS VLVNLFALVS PLFIMNVYDK VVPNLAFSSL WVLAIGASVA YIFDLILRQL RSYLIDVAGK KVDIIVSSRL FAKAIGIPLE KRSPSVGGMA RQLGEFDSIR EILTSATITT LVDLPFAIFF MIIIYVVAGD LAVIPLIGSM IIIGYTLVMQ PKLKAAIEES NKFSSLKHGH LIESLASLES IKSSGAEGLV QKSWQQMIGH TANWQLKSKK ISTAVTNLAN FVVQLSVVCV VILGVYRVAD NEISMGGIIA AVILSSRAIS PMAQLAGLMT RGNHTASALR QLNEIMTQED EFENKGHLVS RQRLQGKISA DHISFAYPGS EKPVLHPMSI NIEPGERIAI IGRNGSGKST LAKMLVGLYQ PTKGSLRYDG LDSAQIHPTD LRRNFGYLPQ DITLFHGTIR DNILFGTRQV TEHQLIRAVQ LSGISQFTDL DSEGLDQQVG EGGQSLSRGQ RQTVALARAT LNDPPVLLMD EPSASLDARA EKQFIHAMQN VTRDRTLLLI THKMHLLKLV DRIVVLDRGH VVIDGPKAEV LDKLSKGLLA GGQTNE
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