Gene Swoo_0476 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0476 
Symbol 
ID6114710 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp595085 
End bp597265 
Gene Length2181 bp 
Protein Length726 aa 
Translation table11 
GC content45% 
IMG OID641631964 
Producttype I secretion system ATPase 
Protein accessionYP_001758869 
Protein GI170724843 
COG category[V] Defense mechanisms 
COG ID[COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain 
TIGRFAM ID[TIGR03375] type I secretion system ATPase, LssB family 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCGACAT CAGTTCCTAA AAAAACTGAG CAATGGACAG TGTCAGCCTC ACAGCGAGTG 
ACAGTCGATC CATTGCTAGA CAGTTTAGTA TTATTGACCG AATACTTCGG TAGTCCCTGC
TCCAGCGAAT CGATGGCGGC AGGTCTACCT TTGTCCGGTA GTGTACTTAC TCCAGATCTG
GTTCCCCAAG CTGCAGGGAG GGCAGGCTTA GCAGCCAAGC TCACTCAAAA AGGCTTGAAT
CAGATCTCGC CTATATTTTT ACCTTGTATC TTGCTACTTA AAGATAAAAA GGCATGCTTA
CTCCGTGAGT TAGATGTAGA GAAAGACAAA GCTGTTATTC AACTACCAGA AACTGGTGGT
GAACAGGTAC TGACACTTGA AGATTTAGAG GCGATCTATG TTGGCTATCT TTTTCTTGTA
AAGCAGCAGT ACCGTGGTGA CATGGGCTTT GATGTTCATC AACATGACAG CACAACACAT
TGGTTAGTGC AGACCCTTAG GGACTCTGCA CCTATCTATC GAGATGCGCT ACTGGCATCG
GTTTTAGTTA ACCTATTTGC GTTAGTGTCC CCACTCTTTA TCATGAATGT GTATGACAAA
GTTGTGCCAA ACTTAGCTTT CTCATCACTT TGGGTACTCG CCATAGGCGC GAGTGTCGCT
TACATATTTG ATCTAATACT AAGACAGCTT CGATCCTACC TTATTGATGT GGCTGGGAAA
AAAGTTGATA TCATTGTTTC ATCCAGGCTA TTTGCTAAAG CGATAGGTAT ACCGCTAGAG
AAGCGCTCCC CTAGCGTCGG TGGAATGGCA CGGCAACTGG GCGAATTTGA CAGCATTAGA
GAGATATTAA CCTCGGCAAC CATCACTACT TTAGTCGATC TCCCTTTTGC CATATTTTTC
ATGATCATCA TTTACGTTGT AGCCGGTGAT CTGGCCGTAA TACCTCTGAT AGGCAGTATG
ATCATTATTG GTTATACACT AGTCATGCAA CCTAAGTTAA AAGCGGCTAT TGAAGAGAGT
AATAAGTTTT CTAGCTTAAA ACACGGACAC CTTATTGAGT CTTTAGCGTC TCTAGAATCA
ATTAAATCTA GTGGTGCAGA GGGTTTAGTG CAAAAAAGTT GGCAGCAGAT GATTGGTCAT
ACAGCCAATT GGCAGCTTAA ATCTAAAAAG ATCTCGACAG CAGTCACTAA CTTAGCCAAT
TTTGTCGTGC AACTTTCTGT TGTTTGTGTC GTGATTTTAG GGGTTTACCG AGTTGCCGAT
AACGAAATAT CTATGGGTGG GATTATTGCG GCGGTGATCC TGTCCAGCAG AGCTATCTCC
CCTATGGCGC AGCTAGCAGG CCTTATGACT CGTGGTAACC ACACAGCAAG TGCACTACGC
CAACTTAACG AGATCATGAC TCAAGAAGAT GAGTTTGAAA ATAAAGGTCA TCTTGTAAGC
CGTCAACGCT TGCAGGGTAA AATCAGTGCA GACCATATTA GCTTCGCGTA TCCTGGCTCT
GAAAAGCCAG TACTGCACCC AATGTCTATC AATATTGAGC CCGGAGAGCG TATTGCCATT
ATTGGCCGCA ATGGTTCAGG AAAGAGCACA TTGGCTAAAA TGCTTGTGGG CCTCTACCAA
CCAACAAAAG GCAGTCTGCG TTATGACGGT CTTGACTCAG CCCAGATCCA CCCTACAGAT
TTAAGACGTA ATTTTGGTTA CTTGCCTCAA GATATCACTC TCTTTCACGG CACTATCAGG
GACAATATCC TCTTCGGCAC TCGTCAAGTC ACAGAACATC AATTGATCAG AGCCGTTCAA
CTCTCTGGGA TCAGTCAGTT TACCGATTTA GACAGCGAAG GTTTAGATCA GCAAGTAGGT
GAAGGCGGCC AGTCACTCTC ACGTGGGCAG AGACAGACCG TAGCCCTCGC TAGAGCAACC
CTAAACGATC CTCCAGTGCT CTTAATGGAT GAACCTAGTG CGAGCTTAGA TGCTAGAGCA
GAGAAGCAGT TTATTCATGC AATGCAAAAT GTAACCAGAG ACAGAACCTT GCTGCTTATT
ACCCATAAGA TGCACCTGTT AAAACTGGTT GACCGAATAG TCGTGTTAGA CAGAGGACAT
GTGGTCATCG ATGGACCCAA AGCGGAAGTG CTAGACAAGC TAAGTAAAGG TTTGCTTGCC
GGAGGGCAAA CCAATGAGTA A
 
Protein sequence
MSTSVPKKTE QWTVSASQRV TVDPLLDSLV LLTEYFGSPC SSESMAAGLP LSGSVLTPDL 
VPQAAGRAGL AAKLTQKGLN QISPIFLPCI LLLKDKKACL LRELDVEKDK AVIQLPETGG
EQVLTLEDLE AIYVGYLFLV KQQYRGDMGF DVHQHDSTTH WLVQTLRDSA PIYRDALLAS
VLVNLFALVS PLFIMNVYDK VVPNLAFSSL WVLAIGASVA YIFDLILRQL RSYLIDVAGK
KVDIIVSSRL FAKAIGIPLE KRSPSVGGMA RQLGEFDSIR EILTSATITT LVDLPFAIFF
MIIIYVVAGD LAVIPLIGSM IIIGYTLVMQ PKLKAAIEES NKFSSLKHGH LIESLASLES
IKSSGAEGLV QKSWQQMIGH TANWQLKSKK ISTAVTNLAN FVVQLSVVCV VILGVYRVAD
NEISMGGIIA AVILSSRAIS PMAQLAGLMT RGNHTASALR QLNEIMTQED EFENKGHLVS
RQRLQGKISA DHISFAYPGS EKPVLHPMSI NIEPGERIAI IGRNGSGKST LAKMLVGLYQ
PTKGSLRYDG LDSAQIHPTD LRRNFGYLPQ DITLFHGTIR DNILFGTRQV TEHQLIRAVQ
LSGISQFTDL DSEGLDQQVG EGGQSLSRGQ RQTVALARAT LNDPPVLLMD EPSASLDARA
EKQFIHAMQN VTRDRTLLLI THKMHLLKLV DRIVVLDRGH VVIDGPKAEV LDKLSKGLLA
GGQTNE