| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0475 |
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| Symbol | |
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| ID | 6114709 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 593710 |
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| End bp | 595092 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641631963 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001758868 |
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| Protein GI | 170724842 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.205035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAAAA AACTAACCAC TCATGATCTT GAGATGATCG ATGATGTTTA TGGTGCCATG
ATGACAGATG CACCAAGCAG TCATAGGTTA ATCATCTGGA CACTAGTGGC TTTAGCCACA
TGCTTTTTAA TTTGGGCTTT TTTTGCAGAA CTTGACCAAG TAACAACTGG CATGGGGAAA
GTGATCCCCT CATCTCAAGT CCAGATAATT CAAAGCCTGG ATGGCGGCAT CATGCAGGAG
CTATATGTTC AGGAAGGGAT GATAGTTACT AAAGGGCAAG CCTTAGTTCG TATTGACGAT
ACTCGCTTTC GTTCCGACTT TGCTCAGCAA GAGCAAGAGG TCTATAGCCT ACAAGCCAAC
GTAAAACGGT TAGAGACAGA GTTAAATAGT ATTGTCATCA CCGATATGGC AGCTGATTGG
CGCGAACAAG TAAGGATCAC TAAGTTACCA CTGCAGTTTT CTGCAGAGTT AGCAGAGTTG
GAGCCTGAGC TAATCGAACG TCAAAAAGAT GAATACTCAG GCCGATTAGA CAGCCTAAGC
AATCAGTTAG AGATCTTAGC CAGACAGATA CAGCAAAGGC AGCAAGAGAC ACAAGAGTTA
GCTTCAAAAA TACGTACTCT AACCAAAAGT TACCAATTAG TCTCTCGAGA GCTGTCGCTA
ACAAGGCCTC TGGCGGATAA AGGCATTGTG CCTGAAGTTG AACTGCTAAA ACTCGAACGT
ACGGTAAATG ACATACAAGG TGAGTTAGCC ACCCTAAGGC TTCTGCGTCC TAAGGTAAAA
GCCTCTCAAG ATGAAGCTAT TTTAAAGCGA CGCGAAGCAG TATTTGCCTT TTCAACTGAA
ACGCGAACTC AACTGAGCGA TCTACAAACT AAACTATCAC GCATGAGCGA AGCGCAGGTT
GGTGCTCAAG ATAAAGTGAA TAAGGCGGAG ATTGTATCGC CAGTAAACGG GACAATAAAA
AGCATTTATA TCAATACATT GGGTGGGGTT GTTCAACCTG GCATTGATAT TTTAGAAATT
GTTCCGTCAG AAGACCAACT GCTTATTGAA ACTAAGATAA CACCTAAAGA TATTGCGTTT
TTACACCCTG GTCTTCCAGC CGTAGTCAAA GTCACAGCAT ATGACTTTAC TCGCTACGGA
GGGTTGAACG GGACTGTGGA GCACATAAGT GCTGACACAT CACAAGATGA GGAGGGGAAC
AGCTTCTATC TTGTCAAGGT TCGTACTGAA CTTTCAAGCT TAACAAGGGA CGATGGCACA
GAGATGCCGA TAATACCAGG GATGTTGACT TCAGTTGATG TTATTACTGG GCAGAGATCC
ATTCTAGAGT ACATACTTAA TCCAATTTTA AGGGCAAAAG ATACAGCGCT CCGAGAGCGT
TAA
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| Protein sequence | MSKKLTTHDL EMIDDVYGAM MTDAPSSHRL IIWTLVALAT CFLIWAFFAE LDQVTTGMGK
VIPSSQVQII QSLDGGIMQE LYVQEGMIVT KGQALVRIDD TRFRSDFAQQ EQEVYSLQAN
VKRLETELNS IVITDMAADW REQVRITKLP LQFSAELAEL EPELIERQKD EYSGRLDSLS
NQLEILARQI QQRQQETQEL ASKIRTLTKS YQLVSRELSL TRPLADKGIV PEVELLKLER
TVNDIQGELA TLRLLRPKVK ASQDEAILKR REAVFAFSTE TRTQLSDLQT KLSRMSEAQV
GAQDKVNKAE IVSPVNGTIK SIYINTLGGV VQPGIDILEI VPSEDQLLIE TKITPKDIAF
LHPGLPAVVK VTAYDFTRYG GLNGTVEHIS ADTSQDEEGN SFYLVKVRTE LSSLTRDDGT
EMPIIPGMLT SVDVITGQRS ILEYILNPIL RAKDTALRER
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