| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0474 |
|---|
| Symbol | |
|---|
| ID | 6114708 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 592267 |
|---|
| End bp | 593679 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641631962 |
|---|
| Product | TolC family type I secretion outer membrane protein |
|---|
| Protein accession | YP_001758867 |
|---|
| Protein GI | 170724841 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0171025 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCA GTTCAATTCG GCAGTTAAAA CGCAGTGCTT TGGCACTGGC AGTTAGCGCG
CTGATTATTC CGGCATCAGC ATACAGCCAA ACACTGGAGC AAGCCGTAGC ACACACATTG
GATACAAATC CTGAGATCCG CATAGCCTTT AACCGATTTA AAGCTCGAGA GGAGCAGGTT
AATCAAGCTA TAGCGGGTTA TATGCCAACC GTTGATCTGA CTGGCGGTTA TGGATGGGAG
CAAACCAATA GTCCTTCGAC TCGAAGAAAG AAAAACCAAG GTGACGTAGA TTCTGACGGT
GTTATAGAGT TAGAACGTGG CGAAGCTGGT TTTAGCATCA AACAGATGCT GTTTGATGGT
TTCTATACTA GCAGTGAAGT TGATCGATTC AGCTTCGAGG CCAGTGCCGA TCAGTGGGCA
TTATTCTCTG CAGCAGAGGA TATGGCACTC GATGTTGCTA AAGTCTACAT CAACTATATC
CGCACCGAAC AGGTGATGAC GCTTGCAGAA AAGAACCTGC TTAGCCATCA AGATATCTAC
GAACAGATCA AGCAAAGAAC TGACTCAGGT TTAGGCTCTA CAGCTGATCT ATCTCAGATA
ACGGGTCGTT TAGCACGTGC AAACGCTAAC CTTATTTCGG CAAAAAATAA CTTTTATGAC
GCTAAAGCGC AGTTTATAAA AGTCGTTGAG TCACAACCAG AAAACTTGAT TGTGCCTGTG
CCCGATGACG ACATGATGCC GGAAGATCTC AATACCAGTA TTCAACTGGC TCAAGAGAAC
CACCCAATTC TAAAGTCGGC GAGTAGCGAT ATTGAAGCAG CAAAGAATGA GAAATCATCA
GCTCAATCTA ACTATTATCC TAAGCTGTCT TTAGACTTAG CTGGTAACTG GAATAATGAC
GTAGATGGCG AAGATGGTTT TAGCAACATT GCTAGCTCAA GTGTAGGTGG TCACAGCAAC
GATCTGGTTG CTATGGTTCG AATCAAGTAC AACCTCTTCT CTGGCGGTAA AGATCTTGCT
CGTGAGAAAG AAGCAGCATA CAAGATCGGC GAAGCAAAGG AGATCCGTCA ACGTGCGCAC
CGCCAAGTTG TTGAAGGAGT CAACCTTGCT TGGAACGCTT ATGAACTGCT TGAACCACAG
AAGCTGTACA TTCGAGATCA TGTGATCGCA GCCAAAGATA CACAAGTGGC CTATAGCCAA
CAGTTTAACT TAGGTCAGCG TACACTGCTC GATCTGCTCG ATACTGAAAA TGAGCTATTC
GAAGCACGTA AAGACTATCT TGAAGCTGAG TATGACCAAG TAATCTCTGA GTACCGAGTG
TTAAATGCAA CTGGCAGACT ATTAGAATCA CTAAGAGTCA CTCCTCCGGA TGTATGGCAA
GGTGAACGAA ACTACGAAGG AGGGGTTAAC TAA
|
|---|
| Protein sequence | MNTSSIRQLK RSALALAVSA LIIPASAYSQ TLEQAVAHTL DTNPEIRIAF NRFKAREEQV
NQAIAGYMPT VDLTGGYGWE QTNSPSTRRK KNQGDVDSDG VIELERGEAG FSIKQMLFDG
FYTSSEVDRF SFEASADQWA LFSAAEDMAL DVAKVYINYI RTEQVMTLAE KNLLSHQDIY
EQIKQRTDSG LGSTADLSQI TGRLARANAN LISAKNNFYD AKAQFIKVVE SQPENLIVPV
PDDDMMPEDL NTSIQLAQEN HPILKSASSD IEAAKNEKSS AQSNYYPKLS LDLAGNWNND
VDGEDGFSNI ASSSVGGHSN DLVAMVRIKY NLFSGGKDLA REKEAAYKIG EAKEIRQRAH
RQVVEGVNLA WNAYELLEPQ KLYIRDHVIA AKDTQVAYSQ QFNLGQRTLL DLLDTENELF
EARKDYLEAE YDQVISEYRV LNATGRLLES LRVTPPDVWQ GERNYEGGVN
|
|---|
| |