| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0471 |
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| Symbol | |
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| ID | 6114705 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 589005 |
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| End bp | 590927 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641631959 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001758864 |
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| Protein GI | 170724838 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACTGT TTCGACAGAT ATACTCACTA CTGTTCGGCC TATTCTTACT GGTGGTGGCT
AGTCTAGGCT ATGTACAATT TACAGAGACC CAGAGCTTTT TAACTAAGCA GATGGAGTCC
GACCTAAATA ATACCAGTAA TTCACTTGGC ATAATGCTAG TTCCTGATCT TGAAGCAGGG
GATATCGTTG GTGCCGAAAC CCTTATCAAC GTTATCTTTG AAGGCGGTTA CTACCAGCAA
GTTAAATTAA CTTGGTTGGT CGATGGTAAA CAGCAAACTT GGGAAAACCC CATTAATATT
CAAGGTGTTC CACAGTGGTT TATCGATCTC GATTTTTTCC AAACAATAAA AAAAGAGAGC
ATAATTACCT CTGGATGGAT ACAGCTGGCG AAATTAGAGC TTACTGCCCA TCCAGGTTTT
GGATATAACG AGTTATGGCG AACAATGACA AACGCCATCA TCGTTTTCTC CATACTTTTT
CTCATCGCTA TTGTAGTTGC CAGGGTCGGA TTGACCATGA TACTCAAACC TCTACATGAG
ATAGCTGTCC ATGCAAAAGA GATTGCTCAA CGCAAGTTTG GCCCAGATAT GCGAGTGCCT
AAAACTGCTG AGCTCAAATC CGTTGTTCTT GCCTTTAATA GTATGTCAGA TCAGCTAAAG
CAGCTCTTTA ACTCCCTTGA TGAAGAGGTC GGTGAACTAC GTAAGAAAAA CCTAGTCGAT
CAAGTATCAG GCTTGCCAAA CAGACAGTAT ATGATGGGGC GTCTCAATAG CTGGCTTAAT
GAGCCTGCTA GCGGTGCCTT GGTCATGGCT AAGTTTGACT GGTTAGAGGA GGTTCATAGC
AAATATGGCT ACCAAGTAAG AGATGAAACC ATCAAGCTAC TTGCAGAGAA AATGCAAGAT
CACCTCGATG AAGTCGCGAG CTCGGTCATA GCTCGAATTG CAGCCTATGA ATTTGCCTTC
TTAATCACTA GCTCTGAGCA TGATCAGACA AGTCGTTATC TGCAAGCCTT AATACGTACC
ATCAATCAGG AGATGTCAAA GGCCGGCTGT AAGCCTAATG AAAACTTTGC CATTGGTGTT
GCCGAGCGTA TTGGTCATAT GTCGGTTTCA GATATTTTAG CTCAGACAGA CAACGCGCTT
CAAAAAGCCA TCAAGGAAGA TAAAGTCTTC CATTGGTTTG AGACAAACGA GAAACAGCTC
TTCACTCGAG AGCAGTGGCG TGAACATCTA AGTGCAGCCA TACAAGATTG TAACTTCAAG
TTTAAATGGC AACCTGTCCA TATTAATGAC AGTGATAATA TCCTACAAAG GGAGCTTTAT
TGTCAGCTTA ATATGGGGGA TAAGATCATC CATGCGGGGC AGTTTATGCC CTATGTTGAG
CTGCTATCAC TAGGCTCGAT GTTAGATAAG CATTTGATAC AAGATGTGCA TGAAAAACAT
CTACTAAACA AGAACCAAGA GCCCATAGCC ATCAACTTAA CTTTCCAGAG CTTAAGTGAT
CCTAAGTTCC ATGAATGGCT CAATACCTTC TTGCGCTCAA CAAACCTATC TGAACGTATC
TGTTTCGATA TTCCAGAAGC GGCAGTCTAT AGCGATCCTG ATTCTTGCCA TGCGATCTGT
ACTGTTATTC GAGACAACGG CGCCCAGTTT GGCATCGATC ACTTCGGCCG TCAGTTTGGC
TCAATGTCGT ACCTGCAGTC ACTGAGACCG AGTTATGTGA AATTAGATCA ATCCTTCGCT
TACTATGATG ACAGTGAACA TAGTGGTGAG CTGTGTCGTG CAATCATCAA TGTTGCTCGA
GGATTAGATA TCAAGGTTAT TGTGACGGGT ATTGAAGAGA TGCCTCAGCT AGAGCGATTT
GTGCCACTGA AAACCAATGC CTTTATGGGC TATATCTTCC CGCCAACAGA TATTGAAGAT
TAG
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| Protein sequence | MTLFRQIYSL LFGLFLLVVA SLGYVQFTET QSFLTKQMES DLNNTSNSLG IMLVPDLEAG
DIVGAETLIN VIFEGGYYQQ VKLTWLVDGK QQTWENPINI QGVPQWFIDL DFFQTIKKES
IITSGWIQLA KLELTAHPGF GYNELWRTMT NAIIVFSILF LIAIVVARVG LTMILKPLHE
IAVHAKEIAQ RKFGPDMRVP KTAELKSVVL AFNSMSDQLK QLFNSLDEEV GELRKKNLVD
QVSGLPNRQY MMGRLNSWLN EPASGALVMA KFDWLEEVHS KYGYQVRDET IKLLAEKMQD
HLDEVASSVI ARIAAYEFAF LITSSEHDQT SRYLQALIRT INQEMSKAGC KPNENFAIGV
AERIGHMSVS DILAQTDNAL QKAIKEDKVF HWFETNEKQL FTREQWREHL SAAIQDCNFK
FKWQPVHIND SDNILQRELY CQLNMGDKII HAGQFMPYVE LLSLGSMLDK HLIQDVHEKH
LLNKNQEPIA INLTFQSLSD PKFHEWLNTF LRSTNLSERI CFDIPEAAVY SDPDSCHAIC
TVIRDNGAQF GIDHFGRQFG SMSYLQSLRP SYVKLDQSFA YYDDSEHSGE LCRAIINVAR
GLDIKVIVTG IEEMPQLERF VPLKTNAFMG YIFPPTDIED
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