| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0469 |
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| Symbol | |
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| ID | 6114699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 584334 |
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| End bp | 586958 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641631953 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_001758862 |
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| Protein GI | 170724836 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAGGG ATGAACAGAC TCAACACTCA CAGCGTGAAT TTGAGCTTAT GCAAAAAAGG
ATTTCGCGTT TAAAGAGCTT AGCTCTTAAA TATAAGCGCG CAGAGGTGAC GCAAAATATG
TTGCTTGAGT TATCCAACTT AGCAGCAAGC GTAAGCTCCC CAGCTGAATT CTACTCAGGG
GTACATGGCT ACCTCAGCAC TCTTCTCCCC GCAGATAACT TCTTTGTAGC ACTACTCGAT
CCGCTAAATA ACGTACTTGA AATCCCTTTC TTTCTCGATG AAAAAGACAA ACATCCCCTT
GAACTCTTTT CCAAAGAAAA CATATCCGCA AAACTGCTCA GCGGCTTAAC AGGCTATGTG
CTTAAAACTG GGAGAAGCTT GCTGTGCAAC CAAGACAAAT TTGAGCAGTT AATCTTAGAT
AAGCAGATAG AGAGTTTAGG TGCCCCCTGT CATCTATGGC TCGGTGTTCC GATAACAGTA
CATCACTCTG TCGTAGGGGT CCTGGTTATT CAAAGTTACT CTGAACAGGT TAATTTCACA
GAGGTGGATA TTGAGCTCCT TGGATTTGTG AGTCATCAGA TATCCAACAT CATGGAGAGG
GTACAACACC AGGAGCAGCT TGAGCAGGCT ATAGCACAGA GAACAAGAGA GCTAAGCGTT
GCTTATGATA AGCTAAAACA GGAAGTGAAT GAGAAGCGAC GTGCGGAGCT GTTACAAAAG
TCGCTCTTTG AGATAGCCGA TCTCGCGACC TCAAATATTG ATACTCATGC ATTTTACTCA
GAGCTCCATA GAGTCATTAG TCACCTTATC CCAGTAAGTA ACTGTTATAT CGCCCTGTTA
AATGATCAGT GTAATCAGCT CAACTTTCCA TTCTATGTCA GTCAAACGAA TGGGCGAGTT
CCCGATAGTA GAATAATTTG TGATGGCTTA ACTGAGTATG TCATTAAAAA CCGTAGACCC
CTGCTGCTAC AAAATAGTGA TATTCAGTCC TTGGTCAACT CAGGTCAGAT CTACGCTAAA
ACTCCTGAGC TTAATAATAC TAAAGATATC TATCAATGGA TTGGGATCCC TCTGTTCATC
CATGATCAGG TCCGCGGTGC ATTAACCATC TATAGTACAA ATAAAACCCG TCGTTATCAG
GAGAATGATC TCGACCTGCT AACCTTTGTC TCTCAGCATA TTGCCAGCGC CATCGAACGA
AAGTTATCCG CAGAGTCTCT AATTGCCAGC TATGAACAGC TCGAAGATAA AGTTATCGAG
CGTACTCAAG CACTCGCTCT TCTCAATCAA GATTTGGAGA AAGAGATAGC TCAAAGACGA
AAAATGGAGC AACAACTCGT CCATGATGCC AACCACGATA CCTTAACAGG ACTCCCCAAT
CGCGGCATGT TTATGGAGAA ACTCTCTCAA GCGATTAAAC ACACTCGCAG GCATAAGCTA
GATCGCTTTG CGCTCCTGTT TATCGATTTA GACAGGTTCA AGTTGATCAA CGATACCTTA
GGTCATATAG AGGGAGACAG GTTTCTGGTC GAAACCTCAA GACGACTAAA ACTCTGCATC
CGAGAGAATG ATAGCCTAGG CCGGATTGGT GGTGATGAGT TTGTTATCTT GCTCGACAGA
ATAAATGGTT CTCAAGATGC AAAAGAGGTC GCAGAGCGTG TGCTCACTGG TTTATCAGAG
CCCTATAAAC TCGCCAATCA GCAGTTTAAA TCAGGCGCGA GTATAGGTAT CGCCTTTAAC
CAGCATAAAA CAGACACCAG TGAATCCCTG CTACGGGACG CTGATGCAGC CATGTACCGA
GCTAAAGCAA ATGGTAAAGG CTGCTATGTT ATTTTTGATG ATAAATCCCA TAAGCAACTC
GATAAAGATA TTGAACTTGA ACTTGAGCTG CGCAATGCGA TCTCAAGTCG TTCGCTCTTA
GTTAGCTACT TGCCAATAGA AGATTTGCAA ACAGGAGAGA CCTTGGCCCT TGAGCCACGT
CTATATTGGA ACCACCCTAG TTTAGGCAAG ATTAAACAGG CAAAACTGCT CAATATTGCA
GAGCATTGCA GCTTAACCAC AGAGCTAGAT ATCTTCCTAT TGGAGACGTT AAACAGTGAG
TATGCCCAAC TACAAAAGAT GTCACTGGCC CACCTGCCGT TGCATATCAA TATCTCGGGT
CATCACCTCA AACATAAGCA CGCATTAAGA CGTCTTAAGA ATAAGTTGAA ACAGAGCTAT
TTTAGCCGTG AGCAACTCTG GCTATTTTTC GATGAGCAGG GGTTTATCTT CGATACTGAT
AACCACATTA ATGCTTTCGA TCTGCTCACA AAGCTAGAGG TCAACTTAGC GCTCAGTGGA
TATGGAAGCG CTCATAGTGC TCTCAGTAGC CTGACCTTCC TTCCCCTAAA AGGGCTCAAA
CTGGACCCAA GCTATCCCTG TCATCTAGAC AGTAAGCAAC ACAAAAAGCT GCTTAATGCC
CACTTTTTAA CGGCTCAAGC GCTGGAGTTA ACGGTCTTTG TTGACGGTAT TAGCACAAAG
CAGCAGAAAG AGTCGATGCT AGAGATAGGT TTTGAGCAGG GACAGGGCCA AGCACTTGGA
GAGGTATTAC GACTCCAAGA GGTACAAGCC TCAGTCTGTG CCTAA
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| Protein sequence | MFRDEQTQHS QREFELMQKR ISRLKSLALK YKRAEVTQNM LLELSNLAAS VSSPAEFYSG
VHGYLSTLLP ADNFFVALLD PLNNVLEIPF FLDEKDKHPL ELFSKENISA KLLSGLTGYV
LKTGRSLLCN QDKFEQLILD KQIESLGAPC HLWLGVPITV HHSVVGVLVI QSYSEQVNFT
EVDIELLGFV SHQISNIMER VQHQEQLEQA IAQRTRELSV AYDKLKQEVN EKRRAELLQK
SLFEIADLAT SNIDTHAFYS ELHRVISHLI PVSNCYIALL NDQCNQLNFP FYVSQTNGRV
PDSRIICDGL TEYVIKNRRP LLLQNSDIQS LVNSGQIYAK TPELNNTKDI YQWIGIPLFI
HDQVRGALTI YSTNKTRRYQ ENDLDLLTFV SQHIASAIER KLSAESLIAS YEQLEDKVIE
RTQALALLNQ DLEKEIAQRR KMEQQLVHDA NHDTLTGLPN RGMFMEKLSQ AIKHTRRHKL
DRFALLFIDL DRFKLINDTL GHIEGDRFLV ETSRRLKLCI RENDSLGRIG GDEFVILLDR
INGSQDAKEV AERVLTGLSE PYKLANQQFK SGASIGIAFN QHKTDTSESL LRDADAAMYR
AKANGKGCYV IFDDKSHKQL DKDIELELEL RNAISSRSLL VSYLPIEDLQ TGETLALEPR
LYWNHPSLGK IKQAKLLNIA EHCSLTTELD IFLLETLNSE YAQLQKMSLA HLPLHINISG
HHLKHKHALR RLKNKLKQSY FSREQLWLFF DEQGFIFDTD NHINAFDLLT KLEVNLALSG
YGSAHSALSS LTFLPLKGLK LDPSYPCHLD SKQHKKLLNA HFLTAQALEL TVFVDGISTK
QQKESMLEIG FEQGQGQALG EVLRLQEVQA SVCA
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