| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0452 |
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| Symbol | |
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| ID | 6114682 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 559892 |
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| End bp | 561880 |
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| Gene Length | 1989 bp |
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| Protein Length | 662 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641631936 |
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| Product | TonB-dependent copper receptor |
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| Protein accession | YP_001758845 |
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| Protein GI | 170724819 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACCGGC ACAAACAGAT ATTAACTTCG CTTTTCACCG CAAGTAGCTG CATCTTATCC
CCCTTTAGCA CCTTTGCTGA CACTCAAGGC TGTGAGCAAG ATAGTTGCGA TGAGCATATT
GTCGTGACTG GAGAGCTGAT GCGTGAGCCC GCTAAGGTGT TTACCGACCC TAAGAAACCT
AGATTGCCTC TGCCCGCCTA TGATGGCGCA GGCTTTCTTA AAACCATTCC CGGTTTTAGC
ATTGGTCGCA AAGGCGGCGC GGGTGGCGAC CCTTCTCTGA GGGGATTGGG CGGCTCGCGC
CTAAGTATCG TCGATGATGG TCAACATGTT TACGGTACCT GCGGCGGACG TATGGATCCC
CCTACTGCAT ACATCTATCC AGAAGCCTAT GACAATATTA CCGTGATCAA AGGACCGCAG
ACGGTGAAAT ATGGCCCAGT TGGCTCGGCA GGAACCGTGC TATTTGAGAA AGATCGTCAC
AGTTTTAGCG AACAAGATAT GGAGGGGCGC GCCAGTATCA CAGGGGGAAG CGCCGATAGA
AGAGACTATC TAGTTGAGTT AAAAGCTGGT GATGAGAAGC ACTACTTAGA TCTCGATATT
AATCAGTCGA GCAGCGACCA TTATCAAGAT GGTAGCGGCA ACAGCGTTCA ATCCAGCTAT
GACAGAAATA ACTACAACCT AGCACTGGGA TGGACCCCGA CAGATAGCAG CGTTATCGAA
CTGGCTTACG GCCAGTCCAG CGGTGAAGCC GAATATGCCG ACAGAGCCAA TAAAGCCCGT
GAGATCAGCA ATGAAAACCT CACCCTTCTG GCCCAATTCG AATTTGACAG TGAGTTGATT
AACGGCCTCG AATTTCAGGC ATACACCAAT GAGAACAACC ATATTATGGA TCAGTTCGAC
CAAGGGGTGA ACTCTGGCAG CAATGTTCGC CGAAGCACTT ATGGTGGCCA TCTGTGGCTG
GATCTCACCC TAGGTGACAA CTGGCAAGCT ACCGTGGGAG TTGACTATAT GTCTAGCGCT
CACGAGGGTC GCGCCATCAC TGCCAATGTT GACTTTGGGC TCGATGACCT ACTCTCAAAA
CCTTTTAACG ATAATATGCG CTATGAAAAT AGCGGCCTGT TTATCGAAGC AAGTGTTGAT
ATGGGTAAAG GGACCTTGTT ATCGGGCCTT AGATTCGACC ATTGGCAAAC CAAGCTTTTT
GTTGCCCAGC AAGGCAAGCG CACCGACGAA CTCTACAGCG GATTTTTACG TTACGAACTC
CTAAGCGGCA ATAGCCAGTA TTACCTTGGT GCAGGCCACG CACAGAGGAT CCCAGACTAT
TGGGAGATAA TGAAATCCAG CTCAGCAAAC AGTGCCGAAA AAGCCTTTGA TCTAGAGCCA
GAGAAAACGA CTCAGATGGA TATCGGCTGG ATATACCAAG CAGATGTAGA GCTTTCAAGC
TCGCTTTTTT ACGGCCAAAT AGATGACTAC ATTCTTATCG ATGCCAATAC TAAGAGCGCA
TCAGCATACA ATATCGACGC CACGGTTTGG GGTGGTGAGT TCGGTATCAG TTACCCCTTT
AGCGATAACT TATCGGCGCA AACGACTCTG AGCTATAGCC GAGGACAGAA TGATAGCCAA
GATGTTCCAC TGGGGCAGAT CCCACCATTA GAGGGGCGGC TCTCACTGGA TTACCAAGAT
GGTAACTGGA CCGCGGGACT GCTGTGGCGT GTGGTCGCCG CTCAAGACAG AGTGAGTATC
GGACAGGGCA ATATCTCAGG GCAAGACTTA GGGGAGAGCA GTGGTTTTGG CACCTTGGCG
GTTAACGGCA CTTGGAAACA TGGCGATGCC ATCTTGGTTA GCCTAGGTAT TGAGAACCTT
TTCGATATCA CCTACGCAGA GCATATCAGC CGCTCTGGTG CAGGTAATGA TGTACCGGGC
AGCGAGCCTA TGTTTCAGGT TCATGAACCA GGCCGTACCG CTTGGGTAAA ACTTGATTAC
ACTTTTTAA
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| Protein sequence | MNRHKQILTS LFTASSCILS PFSTFADTQG CEQDSCDEHI VVTGELMREP AKVFTDPKKP
RLPLPAYDGA GFLKTIPGFS IGRKGGAGGD PSLRGLGGSR LSIVDDGQHV YGTCGGRMDP
PTAYIYPEAY DNITVIKGPQ TVKYGPVGSA GTVLFEKDRH SFSEQDMEGR ASITGGSADR
RDYLVELKAG DEKHYLDLDI NQSSSDHYQD GSGNSVQSSY DRNNYNLALG WTPTDSSVIE
LAYGQSSGEA EYADRANKAR EISNENLTLL AQFEFDSELI NGLEFQAYTN ENNHIMDQFD
QGVNSGSNVR RSTYGGHLWL DLTLGDNWQA TVGVDYMSSA HEGRAITANV DFGLDDLLSK
PFNDNMRYEN SGLFIEASVD MGKGTLLSGL RFDHWQTKLF VAQQGKRTDE LYSGFLRYEL
LSGNSQYYLG AGHAQRIPDY WEIMKSSSAN SAEKAFDLEP EKTTQMDIGW IYQADVELSS
SLFYGQIDDY ILIDANTKSA SAYNIDATVW GGEFGISYPF SDNLSAQTTL SYSRGQNDSQ
DVPLGQIPPL EGRLSLDYQD GNWTAGLLWR VVAAQDRVSI GQGNISGQDL GESSGFGTLA
VNGTWKHGDA ILVSLGIENL FDITYAEHIS RSGAGNDVPG SEPMFQVHEP GRTAWVKLDY
TF
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