| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0447 |
|---|
| Symbol | |
|---|
| ID | 6114677 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 550632 |
|---|
| End bp | 551774 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641631931 |
|---|
| Product | Serine--pyruvate transaminase |
|---|
| Protein accession | YP_001758840 |
|---|
| Protein GI | 170724814 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0075] Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGTAG CACCGAAAAT CGACGCATTT AATCCCCCAC GTAGAACCTT GATGGGCCCT
GGTCCTTCAG ATGTGTATCC AGAGGTGCTT GCTGCCCAAG CGCGGCCTAC CATAGGTCAT
CTGGATCCAC TGTTTGTTGC AATGATGGAT GAGCTTAAAT CCCTAATTCA ATATGCCTTT
CAGACTAAAA ATGAGATGAC CTTAGCCGTC TCTGCCCCAG GCTCTGCGGG CATGGAAACT
TGCTTTGTTA ACTTAGTTGA AGCGGGCGAA AAAGTGATTG TCTGCCGTAA TGGTGTATTT
GGCGAGCGTA TGCGTCAGAA CGTTGAGCGC GTCGGTGCGA CAGCTGTGAT GGTCGATAAT
GAGTGGGGCG AGCCTGTATC GGTAAGCGAT GTTGAAGCTA CACTCAAGGC TAATCCAGAT
GCCAAGTTCC TCGCCTTTGT CCATGCAGAG ACCTCAACGG GAGCGCTTTC AGATGCAAAG
AGTTTATGTG CACTTGCCAA ACAACATGGT TGTTTGTCGA TTGTTGATGC AGTGACATCA
GTCGGCGGCG TCGAGTTGCG AGTCGATGAA TGGGGAATTG ATGCCATCTA CGCGGGTAGT
CAGAAATGTC TTTCCTGTGT ACCTGGCTTA TCGCCCGTAT CGTTTTCACC TGCTGCGGTT
GAGAAGATTA AAGCACGTAA AACTCCAGTT CAGAGTTGGT TTCTGGACCA AACCTTAGTG
ATGGGATATT GGAGCGGCAA TGCGGCAGCT GGTGGTAAGC GTAGCTACCA TCATACGGCT
CCTGTAAACG CACTTTACGC ACTCCATGAA TCTCTGCGTC TACTGGCCAA TGAAGGGTTA
GAGTCGGCAT GGCAGCGCCA CGCCGATATG CATCAAGTAC TGCGCCAAGG TCTAGAGGGG
CTAGGGCTCA AGTTTGTGGT TGATGAGACT TCACGCCTGC CACAGCTTAA TGCGGTATAT
ATTCCTGAAG GCGTCGATGA CGCCGCAGTA CGTAATCAAC TGCTGCAAAA CTATAACCTT
GAGATAGGCG CAGGCCTCGG TGCCCTTGCT GGCAAAGCTT GGCGTATCGG CCTGATGGGC
TTCGGTGCCC GCCGCGAAAA TGTCGCATTG TGCCTTAAAG CATTGGAAGA TGTGTTGAAG
TAA
|
|---|
| Protein sequence | MLVAPKIDAF NPPRRTLMGP GPSDVYPEVL AAQARPTIGH LDPLFVAMMD ELKSLIQYAF
QTKNEMTLAV SAPGSAGMET CFVNLVEAGE KVIVCRNGVF GERMRQNVER VGATAVMVDN
EWGEPVSVSD VEATLKANPD AKFLAFVHAE TSTGALSDAK SLCALAKQHG CLSIVDAVTS
VGGVELRVDE WGIDAIYAGS QKCLSCVPGL SPVSFSPAAV EKIKARKTPV QSWFLDQTLV
MGYWSGNAAA GGKRSYHHTA PVNALYALHE SLRLLANEGL ESAWQRHADM HQVLRQGLEG
LGLKFVVDET SRLPQLNAVY IPEGVDDAAV RNQLLQNYNL EIGAGLGALA GKAWRIGLMG
FGARRENVAL CLKALEDVLK
|
|---|
| |