| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0322 |
|---|
| Symbol | |
|---|
| ID | 6114548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 400531 |
|---|
| End bp | 404976 |
|---|
| Gene Length | 4446 bp |
|---|
| Protein Length | 1481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641631806 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_001758718 |
|---|
| Protein GI | 170724692 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0210085 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAA GCATCTTTCA ACTCATCTTG CTAATTACAG TGATATTAGT CACTTGCCTT
ACACCAACGA AGGCGAGCGA TATTGTGCAG CGTGTATTTT CTGAAAGAGA TGGTTTGGTT
AACGGGACGA TCAACGACAT CAGTTTCGAT AGTTATGGTT TTACCTGGGT TGCGACTGAG
GAGGGACTTT ATCGGGTTAG CAATAGCAAG GTCAGGCGCA TAGACAAAAA AGGGTTTAAT
ACTCGACTAT CTGATGAATA TATCGACTTT GTGGAACCAT TGAGTAAAAG ACATCTTCTT
ATCAGTAATT ATACCGATAC CTACTTATAC GATATTTTAC AAGACTCCTT TATTCGCTTT
GGCAGTGAAG AGTTATTTCC CAATTTTAAC GGTGTTGCTC TTAATACTAT GACTAAGGGA
GAGGGGGAAG ACTATCTCTT TTTAACAAAA ACAGGAGAGT TATTAGCTTT CTCCTACCAA
AATATGACTC TTAATCTTAT CAATAGTCTC CCCGCTAATC AGGATCACCC TTGGTCTATT
TTAGTGGTTT TGGACGACAA ACGCTTTTTA GTCGCTTCTC CATCTCAACT GCAGTTAAGA
GACCAATTAG GAGAGTTTAA AATGGCTCTG GATTGGCAAG AAGATATGGG CATGATTAAA
GGCGTTATAC AGGATTCCTC TAAGCGACTA TGGCTGAGTT CTAGTGATGG CTTTTACGAG
ATAATGCCTG ATGATTTTAA TTTGAGAAAA GTACCTCAAC TCCCTTTTTA CATCACTAAA
GTTGCAGAAG ATCGTAAAGG TAATTTATGG CTGGCAAGTA GAGAAGGATT GATTAAGTGG
CACCCAGAGC ATCAAGAGAT AAAAGTCTAT AAAGGAGACA TCAAACAAGC AGCAAATATT
GATTATATTT TTGATATTGC CATTGATAGC AACGATATTA CTTGGGTGGG TGGGTCCGGT
GACGCACTGG CGGTGGTTGC AGAGCTTCCT GACTTTCTCA AAGAGGTCTA TACAAAAGCT
CCTCCCTATA TAGTTTCTAA TGAGATGATA TGGTCAATTT GGGCTAAAAA TAGTGGAGTG
TGGCTAGGCA CTGATAAAGG CTTAGTTGTA ATAAATAAAG AGTCCCAGAT TAGTGCCACA
GTGTTACCTG AAGAGTTAGC GTTAAACGAT AGCATCTATA AAGTGGATGA ACTTGATTCT
TCACATGTAC TTCTTTCTAC GACAAATGGG CTCTTTGTTG TCCATAAAGA GACGCTTGAA
TCACAGCGTT TTTCTCAGTG GAGCCAGGGA GATAATTCAT TAGAAAATAA ACTTATCTTT
TCCAGCTATC TTGATCCTCA AATTAAAGGG CGCTGGTGGT TTCCTACCGG AAGTGGGTTG
TTTTATTGGG AGCCTGAGCA GCTTAATCCC CAAGAATTGT TAGTTTTTGA AGAGGGTGGT
GGCCAATATA AACCTGACTT GAGAACTGTT TATCGCAGTG AGGATGGTAA GTTATGGATC
GCAGGAAGCG AGCTCTTTGG CTATATAGAT GATATTGGAG TCTTCCATTC GATGCTAAGC
ATCTTTGATG GTTCAAATCG CTCACCTACC ATCAGTTATA TTGAAGAGGT AAGCCCTGGC
ATTCTTTGGT TAGGCAGTTC ATTGGGATTG ATATCTTACG ATTATGATAA AGGGTTGAGC
GAATCATTAA CCAAAAAGTG GCAAGTTGAT TGCTCCTCAG TTTTCTTTCT CCATGAGTCT
CCCCCTTATC GAATATTAGG CTGCCTTAAT TCAATCATCC GCGTGAATAT GAATACTGAT
GAGCTACTTG TTATAGAACA TGAAGATGGC TTGATCAGTC AGGAGCTTAA TGACGGTGCT
TCGTTTTATG ACTCTGGTGC TGGTCTGTAT TTAGGTACGC CAGATGGTGC CATGTTAGTG
AATGTGTCGG AGATGAGAAA CCGCATTAAA AATGATGGGA TCATGCTTGA ATCGGTTTCA
GTTTTTTATG ATAAGTCTAC CGAGATAAGT TTAATACCTG AGAAAAATAG TATTATTAAA
CCTGGTGCAC GGATGATCAA TTTTCAGCTA ACTAGCTTAG ATTATTTAGA CGATCGTCCA
CTCACCTTAC AATACCGTAT ACGTTTGCAA GGTGAACAGG TTGACGTTAA CTATCTTCTC
CTTTCCGATC AGTCCCTTGT TAGCGTATCT GGCCTGAAAG CTGGAAAGTA TGTTCTCGAT
ATTCTTAGTT TGCAAAATGG GATCTGGTCG AGCGAGCCAT ACTCATATCA CTTTGAAGTT
GACGAGTTTT GGTGGGAAAG CTCATGGTTT AAAAGCTTTT TTATCGTCGT CTTACTGCTT
ATCGTCATTA TTATCTTAAT AGGCCGACAG CGCCAAATCT CTGCTTTTAG AGTGGTTAAT
GAAGCATTGG TGGAGAGTGA GGACAGATTA CGCCAGTCTC TCAAAGGCAG TGACTCAGAG
CTGTGGGAGT GGCGTTACGA TACCCAGATG TTCAATCTAG AGAATCAAGG GGCAGCGCTC
ACAGGTAGTA AAAACATACT ACTTACTTTA GATGACTTTC CTGTACATAG AGACGAGAAA
AAAGGGGTTT TGGAAAGTTG GGAGAGTATG TTGAATGGAG ATAGCGATCG ATTTGAAGTG
GAGTATCGCT ACCGTAGGGA GGATAAATCT TGGGGCTGGA CACGTGTGCG AGGTCGGCCT
GTAGACTTTG ACCCAGAAAC TGGGAGGATA ACACGAGTTG CTGGTATATA TTCAGATATT
ACCACTCAGC GTCAACTAGA AGATGATGTA AAGCTATTAG CTCAAGCATT TGAAAATACA
TCTGAAGGTG TGCTTATTCT TGATGCCAAA GAGCGAATCA AAGTCTCAAA TAAAGCGGCT
CAAATAATTC TAGGCTTAGA CGTAGAAGCG TTTCACTCTA AGACCTTTTC CTCCTTAATG
GTGGCTAAAG AGGGGCGTTT AGATGAGGTT GCTAAATTGC TGGGTCGTGG TGACTCCTGG
ACTGGAGAGA GGGAGTTTAT CTGTGCCAAT GGAAACAACT GCCCTGTATG GCTAAATATC
TCTACTATGC TGGGAGGAAA AGGCGACATT GTTCACTATG TAGCAGTATT TTCTGATATT
ACAGAGAGAA AGCGCTCAGA GGCTGAGTTA CGGCGCTTGG CTAATTATGA TGTACTGACT
GGGTTGCCAA ACCGCTCGCT ATTTTCAACT CGTCTTGCTC AATCTATTCA CAGAGCAGAA
CATAGCGGTG AAAAGCTAGC GTTAATATTC TTAGATTTAG ATAGATTCAA ACATGTTAAT
GATTCATTTG GGCATAGCAT GGGAGATGCG CTTTTAGTCG AAGCCGCCAG CAGGTTGCAA
TCTTGTATTC ATGATGGGCA TACCTTGTGT CGTTTTGGTG GTGATGAGTT TGTGATTCTA
CTCAGAGATG TCAGTGATAT TGATATGATC AATCACATAT GTACTGAACT ACTAAAACAG
ATAGAAACCC CCTTTGAACT CTATGGCCGA GAGTTTTTTA TTTCGACGAG TATCGGAGTC
AGTCTATGGC CTGATGATGC AACTCAAGCT GAGAATTTGA TTAAAAATGC TGATCAAGCT
ATGTACCATG CCAAAGAGGA AGGGAAGGGG AATTTTCAAT ATTACTCCTC TGAGCGAAAT
TCCGAGGCAC TTTATCACCT TCATCTTGAA GCTGAGTTAA GACGCGCTAT CGAACGTGAT
GAGTTTGAGC TTCACTATCA GCCCCAAGTT GATATTCTTA AAGATGATAA GTTGATTGGC
ATGGAGGCGT TATTGCGTTG GCGCCATCAT CAAGATGGGC TGATCCGTAC CGATATCTTC
ATCAAGGTGG CAGAATCTTG TGGTTTAATT ATTGATATCG ATCGCTGGGT TCTGCGTCAA
GCTTGTATTC AAGGCGCACA GTGGGCATCG GTCTATGGCG AGAGCTTTAA ACTGTCAGTT
AATATCTCAG CGGTTCACTT TCGCCAGCCA GATTTTATTG AGGGAGTGAA GGCGATTATT
CATGAGACGC AAATCCCTGC GAAAATATTA AATTTCGAGA TAACCGAAGG GGTCTTGATG
AAGGAGCTTA ATATCGCTAA AGCGCATCTT AAGGAGTTGA AGTGTCTAGG GATTGATGTG
GCAATTGATG ATTTTGGTAC GGGTTACTCC TCGTTGGCTT ACCTTCGCCA CTTTGATGTT
ACTACGCTTA AAATTGATCG CTCCTTCCTA ATCGATATAG CGACTAATGA GGCTGATCAA
GCAATTGCCA GCAGTATTAT CGAACTTGCT AGAAACCTGA AGTTAAGTGT TGTTGCTGAA
GGGGTAGAAA CGAAGGCCCA GTTAGAGCAA GTTTTCAGTA GAGGCTGCTA CATTATTCAG
GGCTATTACT TTTCTAAGCC TTTAACTCAG CCTGAGATGG AACGTTATAT GAAAAGTCAA
AACTAG
|
|---|
| Protein sequence | MIKSIFQLIL LITVILVTCL TPTKASDIVQ RVFSERDGLV NGTINDISFD SYGFTWVATE
EGLYRVSNSK VRRIDKKGFN TRLSDEYIDF VEPLSKRHLL ISNYTDTYLY DILQDSFIRF
GSEELFPNFN GVALNTMTKG EGEDYLFLTK TGELLAFSYQ NMTLNLINSL PANQDHPWSI
LVVLDDKRFL VASPSQLQLR DQLGEFKMAL DWQEDMGMIK GVIQDSSKRL WLSSSDGFYE
IMPDDFNLRK VPQLPFYITK VAEDRKGNLW LASREGLIKW HPEHQEIKVY KGDIKQAANI
DYIFDIAIDS NDITWVGGSG DALAVVAELP DFLKEVYTKA PPYIVSNEMI WSIWAKNSGV
WLGTDKGLVV INKESQISAT VLPEELALND SIYKVDELDS SHVLLSTTNG LFVVHKETLE
SQRFSQWSQG DNSLENKLIF SSYLDPQIKG RWWFPTGSGL FYWEPEQLNP QELLVFEEGG
GQYKPDLRTV YRSEDGKLWI AGSELFGYID DIGVFHSMLS IFDGSNRSPT ISYIEEVSPG
ILWLGSSLGL ISYDYDKGLS ESLTKKWQVD CSSVFFLHES PPYRILGCLN SIIRVNMNTD
ELLVIEHEDG LISQELNDGA SFYDSGAGLY LGTPDGAMLV NVSEMRNRIK NDGIMLESVS
VFYDKSTEIS LIPEKNSIIK PGARMINFQL TSLDYLDDRP LTLQYRIRLQ GEQVDVNYLL
LSDQSLVSVS GLKAGKYVLD ILSLQNGIWS SEPYSYHFEV DEFWWESSWF KSFFIVVLLL
IVIIILIGRQ RQISAFRVVN EALVESEDRL RQSLKGSDSE LWEWRYDTQM FNLENQGAAL
TGSKNILLTL DDFPVHRDEK KGVLESWESM LNGDSDRFEV EYRYRREDKS WGWTRVRGRP
VDFDPETGRI TRVAGIYSDI TTQRQLEDDV KLLAQAFENT SEGVLILDAK ERIKVSNKAA
QIILGLDVEA FHSKTFSSLM VAKEGRLDEV AKLLGRGDSW TGEREFICAN GNNCPVWLNI
STMLGGKGDI VHYVAVFSDI TERKRSEAEL RRLANYDVLT GLPNRSLFST RLAQSIHRAE
HSGEKLALIF LDLDRFKHVN DSFGHSMGDA LLVEAASRLQ SCIHDGHTLC RFGGDEFVIL
LRDVSDIDMI NHICTELLKQ IETPFELYGR EFFISTSIGV SLWPDDATQA ENLIKNADQA
MYHAKEEGKG NFQYYSSERN SEALYHLHLE AELRRAIERD EFELHYQPQV DILKDDKLIG
MEALLRWRHH QDGLIRTDIF IKVAESCGLI IDIDRWVLRQ ACIQGAQWAS VYGESFKLSV
NISAVHFRQP DFIEGVKAII HETQIPAKIL NFEITEGVLM KELNIAKAHL KELKCLGIDV
AIDDFGTGYS SLAYLRHFDV TTLKIDRSFL IDIATNEADQ AIASSIIELA RNLKLSVVAE
GVETKAQLEQ VFSRGCYIIQ GYYFSKPLTQ PEMERYMKSQ N
|
|---|
| |