| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0320 |
|---|
| Symbol | aceF |
|---|
| ID | 6114546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 396922 |
|---|
| End bp | 398775 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641631804 |
|---|
| Product | dihydrolipoamide acetyltransferase |
|---|
| Protein accession | YP_001758716 |
|---|
| Protein GI | 170724690 |
|---|
| COG category | [C] Energy production and conversion
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR01348] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.907798 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0349479 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAATCG AAATTAATGT ACCTGATATT GGTGCGGATG AGGTTGAAGT GACAGAGATC
CTTGTTAGCG TAGGCGACAA GGTTGAAGAG GAGCAATCGC TCATCTCTGT TGAAGGCGAT
AAAGCTGCCA TGGAAGTGCC AGCATCGACA GCGGGTGTTG TTAAAGAGAT CAAAGTTGCC
GTTGGCGATA AGGTGTCTAC AGATTCTTTG ATTATGATCT TCGAATCAGA TGCTGCCCCA
GCTGCTCCAG TTGCGGCACC TGCCGCACCA GCTGCGGCTG AACTAAAAGA AGTTCACGTA
CCAGATATCG GTGATGATGA AGTCGAAGTT ACTGAGATTT TAGTCACTGT TGGCGACAGC
ATCTCTGAAG AGCAATCGCT GTTAAGTGTT GAAGGCGATA AGGCTTCGAT GGAAGTACCT
GCGCCATTTG ACGGTGTATT GAAAGAGATC AAAGTTGCGG TCGGTGATAA AGTTTCTACT
GGTAGCTTGG TAATGGTTTT TGAAGTGGCA GGTTCTGCGG CGGTAGCTCC AGCTGCTGCC
TCTGCACCTG TAGCGGCTCC AGTCGCACCA GCGCCATCAG TACAAGAGGT TAACGTACCC
GATATTGGCG GTGATGAAGT CGAAGTAACC GAAATTATGG TTCAAGTTGG CGATACCGTT
ACTGAAGAGC AATCACTGAT CAGTGTAGAG GGTGACAAGG CTTCAATGGA AGTACCTGCA
CCTTTTGCCG GTAAAGTCCT TGAGATTAAG ATAAGCCAAG GGGACAAGGT TTCTACAGGG
TCGTTAATTA TGACCTTTGA AGTTGCCGGT AGTGCGCCTG TTGCAGCTCC TGTAGCTACT
CCAGCCCCTG TTCAAGCGGC TCCTGCGCCT GTAGCGGCTC CTGTTGCTAA TTCTGCTGCG
CCAGCGAAAG AAGACTTTGT TGCGAATGAG GCTTATGCCC ATGCATCACC AGTTATTCGC
CGTCTTGCAC GTGAGCTAGG TGTTAACTTA GCAAATGTAA AAGGCACTGG TCGCAAGAAT
CGCATTATTA AAGAAGATGT TCATAATTAT GTGAAAGCGG CTGTTAAACT GGTTGAGTCT
GGTAACGCAG GTAAAGGTGG TAATAGTGAG TTAGATCTAC TGCCATGGCC AAAAGTTGAT
TTCAGCAAGT TTGGTGAAAC CGAGATTAAG CCATTATCGC GTATTCAGAA GATATCTGGT
GCTAACCTAC ATCGTAACTG GGTGAAGATC CCACATGTTA CCCAATGGGA TGATGCTGAT
ATTACTGAGC TAGAAGCTTT CCGTAAGGCG CAAAATGCAG CCGAAGCGAA GAAAGACTCT
GGCATGAAGA TCACGCCACT TGTGTTCATC ATGAAGGCTG TTGCGAAAGC ATTAGAAGCA
TTCCCAACCT TTAACTCTTC ACTATCAGAA GATGGCGCAA GCTTAGTGCT TAAAAAGTAT
GTGAATGTAG GTATCGCGGT TGATACACCT AATGGCCTAG TTGTTCCTGT GTTTAAAGAC
GTGAACAAGA AAGGGATCCA TGAGCTTTCT GATGAACTGA AAGAGGTATC TAAGAAAGCC
CGTGGTGGAA AGTTAACTGC TGCAGATATG CAAGGTGGTT GCTTCACTAT TTCAAGTTTG
GGTGGTATTG GTGGTACGGC ATTTACGCCG ATCGTTAATG CTCCTGAAGT GGCTATTCTT
GGTGTGTCTA AATCAGACAT GAAGCCAGTT TGGAACGGTA AAGAGTTTGA GCCGCGCCTA
ATGTTGCCGC TATCACTGTC TTACGATCAT CGAGTGATTG ATGGTGCAGA AGGTGCACGC
TTCATTACGT ATCTAAATAA CTGTTTATCA GATATTCGTA CATTGGTTCT ATAA
|
|---|
| Protein sequence | MTIEINVPDI GADEVEVTEI LVSVGDKVEE EQSLISVEGD KAAMEVPAST AGVVKEIKVA
VGDKVSTDSL IMIFESDAAP AAPVAAPAAP AAAELKEVHV PDIGDDEVEV TEILVTVGDS
ISEEQSLLSV EGDKASMEVP APFDGVLKEI KVAVGDKVST GSLVMVFEVA GSAAVAPAAA
SAPVAAPVAP APSVQEVNVP DIGGDEVEVT EIMVQVGDTV TEEQSLISVE GDKASMEVPA
PFAGKVLEIK ISQGDKVSTG SLIMTFEVAG SAPVAAPVAT PAPVQAAPAP VAAPVANSAA
PAKEDFVANE AYAHASPVIR RLARELGVNL ANVKGTGRKN RIIKEDVHNY VKAAVKLVES
GNAGKGGNSE LDLLPWPKVD FSKFGETEIK PLSRIQKISG ANLHRNWVKI PHVTQWDDAD
ITELEAFRKA QNAAEAKKDS GMKITPLVFI MKAVAKALEA FPTFNSSLSE DGASLVLKKY
VNVGIAVDTP NGLVVPVFKD VNKKGIHELS DELKEVSKKA RGGKLTAADM QGGCFTISSL
GGIGGTAFTP IVNAPEVAIL GVSKSDMKPV WNGKEFEPRL MLPLSLSYDH RVIDGAEGAR
FITYLNNCLS DIRTLVL
|
|---|
| |