| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0313 |
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| Symbol | |
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| ID | 6114539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 387315 |
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| End bp | 389024 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641631797 |
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| Product | type IV-A pilus assembly ATPase PilB |
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| Protein accession | YP_001758709 |
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| Protein GI | 170724683 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAACAA CAGGCCTGCA CTTAGGTCTC TCCACTCTTT TCATCCGTAA AAATTTGCTC
ACAGAGGAGC AGATCGCTTC CTCTATCGCC AAATCTAGAC AAAGCAAACA ATCTCTTGTC
TCAACCGTTA TCTCTGAAAA GTTAATTTCG GCTCGTGAAA TTGCAGAACT CTGTTATGAA
GAGTATGGCA CCCCGCTTCT TGATCTTGAT GAGTTCGATA TCGCCAGTAT TCCAGAAGAC
TTCCTTAACA AGAAACTGAT CGAGAAGCAC AAGTGTTTGC CCCTATTTAA ACGAGGAAAT
CGCCTCTATA TTGGTACTTC TGATCCCACA AATATTGCCG CTTTAGAAGA TTTTCAGTTC
AGTGCAGGTT TGCATGCTGA AGCCATTCTA GTTGAAGATG ATAAACTCAC TAAAGCCTTA
GAAAAAGTTT TGGAGGAGGA TATATCCGCA CTGGATATTG GCGGCATAGA TGAAGATGCA
CTAGCCGGTA TTGAAGTTGA AGATACCAGT AAGCGCGATG ACGATCAAAA TGGGGAGAGT
GGTGATGATG CCCCTATCGT TATCTACATC AATAAAATCC TTACCGATGC TATCCGCAAA
GGAGCCTCAG ATCTCCACTT CGAGCCTTAT GAAAAACGTT ACCGCATCCG CTTTCGTATT
GATGGCATAC TCCATGAGGT GTCTGAGCCA CCAGTCAATT TATCTGGTCG AATATCAGCC
CGTTTAAAGG TGATGTCTAA GCTAGATATT GCAGAGCGAC GTGTACCACA AGATGGCCGC
ATTAAGATGA AGCTTTCACG CACAAAGTCT ATTGATTTTC GTGTGAGCAC CCTCCCCACT
ATCTGGGGTG AAAAGATAGT GATGCGTATT CTCGACTCCT CTTCGGCGCA ACTTGGCATT
GAGAAATTGG GCTATGAGGA TGATCAGCGA GAGCTTTATG AAGAGATGCT CTCTAAACCT
CAAGGGATGA TCCTAGTCAC AGGCCCTACT GGCTCTGGTA AAACCGTCTC CCTCTATACT
GGCCTTAATA TATTAAATAC CGAAGAGCGT AATATCTCAA CAGCTGAAGA TCCAGTCGAG
ATAAACCTTG AAGGTGTAAA CCAAGTTCAT ATCAACCTAA AAGCTGGGCT AACTTTCGCC
TCGGCGCTAC GCTCATTCTT ACGTCAAGAT CCCGATGTGG TGATGGTGGG TGAGATCCGT
GATTTAGAAA CCGCAGAGAT AGCCATTAAA GCCGCTCAAA CAGGACACTT GGTACTCTCA
ACTCTGCATA CAAACTCGGC AGCTGAAACA CTCACTCGAC TAATTAATAT GGGCGTTCCA
GGATATAACA TTGCCAGCTC AGTTAATCTT ATTATTGCTC AACGCTTAGC ACGTAGACTC
TGCCCTGAGT GTAAACAGCC AGAAAATGTC CCTGAACATG AACTTCAAAA GCTCGGCTTT
CCACAAACAG CAATCGATAA AGGAATTACC ACATATAAAC CTATTGGTTG TGACTTGTGC
TCCGGAGGTT ATAAAGGTCG AGTGGGGATC TATGAAGTAA TGAAGATGTC AGATGAGATA
GCCCGTACTA TTATGGAGGG AGGTAACTCA TTGCAGATTG CTAATCAAGC TAAAACTCAA
GGTATGCGAG ACTTGCGAGG CTCAGGGCTA CTCAAAGTCA TTCAAGGCGT GACTAGCATT
ACAGAGATCA ACCGCGTCAC TAGCTTTTAG
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| Protein sequence | MPTTGLHLGL STLFIRKNLL TEEQIASSIA KSRQSKQSLV STVISEKLIS AREIAELCYE
EYGTPLLDLD EFDIASIPED FLNKKLIEKH KCLPLFKRGN RLYIGTSDPT NIAALEDFQF
SAGLHAEAIL VEDDKLTKAL EKVLEEDISA LDIGGIDEDA LAGIEVEDTS KRDDDQNGES
GDDAPIVIYI NKILTDAIRK GASDLHFEPY EKRYRIRFRI DGILHEVSEP PVNLSGRISA
RLKVMSKLDI AERRVPQDGR IKMKLSRTKS IDFRVSTLPT IWGEKIVMRI LDSSSAQLGI
EKLGYEDDQR ELYEEMLSKP QGMILVTGPT GSGKTVSLYT GLNILNTEER NISTAEDPVE
INLEGVNQVH INLKAGLTFA SALRSFLRQD PDVVMVGEIR DLETAEIAIK AAQTGHLVLS
TLHTNSAAET LTRLINMGVP GYNIASSVNL IIAQRLARRL CPECKQPENV PEHELQKLGF
PQTAIDKGIT TYKPIGCDLC SGGYKGRVGI YEVMKMSDEI ARTIMEGGNS LQIANQAKTQ
GMRDLRGSGL LKVIQGVTSI TEINRVTSF
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