| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0292 |
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| Symbol | |
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| ID | 6114518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 359731 |
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| End bp | 362343 |
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| Gene Length | 2613 bp |
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| Protein Length | 870 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641631776 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001758688 |
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| Protein GI | 170724662 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATATTG GCAAGAAACT CATCGTCTTT GTTGTTGGCT TCTGTCTTCC GGCAGTTATT
GCCGTTTCTT ACTGTTTAAG CATGTGGTTT GAGCATAGAG TCGATAGATT AAGAATGAAT
GCCGTTAACG CTGAGTTAGT GGCTATTAAG ACACAATTGA ACAGTGATAT TAAACAATTG
ACGCTAATGG CCGATGTTTA TGCGGTTCCT ATTGCAGATC TTAGCCCCAT GTCCAGAGTT
TCATTAGATG AAGCTTGGCG TAACAGTACA ATCTCGGACA GCCTTAGTCT ATTTTATCTT
AATCGAGGAG AGTTGGAGCC TTTCTCACCA CTTTATGATG ATATCCTCTC CTTTGAATTT
GATAAGTTAC CCAAGGAGCT ATTGAGTCAT ACCAAGCGAA AAAGTGGCGT ATATATCGAA
GATAATAGTG GCTTTATGGT TAGTCAGGTG CCCATCACTG ATCATAAGTC AGTTTTGATT
GTAAGAAAGC TGACAGAGGA GCTGCTGTCT AGCTATGGAG CAAATGACTT TGTTCATAAG
ATCTATTTCG CGCCGGGTCC TGCTGATGAT CATTATATAA TCGATGGCGC AAAGTATATT
GTTGATCTCG ATGTCGCGAG CTTACTGCCC CGACAAGATT CCCACCTTGA GGTTCAGTTT
TCCACGGAGA TGTATAACAA GGTTTGGCTT AAATACGATC TTGTGACTTT TGGTATTGTT
GGTCTTGGGC TGTTGATACT CATCATTGGT TATATCTGGT TAAAGCTTGG TCTTATTCGG
CCTTTCCATC GCTTGATGTC TCAACTAGCG GATATTGATC CTAAAGCTAA GGCCTATACG
CCGATACAAG GCTCTGGTTG CTCCGAATTG ATTGTAATGG CAGATAGGGT AAATACATTA
TTAGCACGTA TTTTTCAGCA GAAAGAGCGA GCTAAGATAA CCTTGGAGTC AATTGCTGAG
GCGGTAATTT TAACCGATAC ACACGCTAAA GTTGTTTATT TGAATCCACA AGCAGAGCGA
ATGCTTGAGA TTAAAGAGGC TAAGGCAATT GGTGCCAAGA TAGATACACT TTTAAAAGCG
GACAAAACAA TTAAGAGTGC TTTGTTGAAT GTTATGGGGA GTCAGGTCCA GCAAACTATA
CTGAATAAGC ATATGTTTAG GACTGGTAAT GCTAAGGTTA TGGAGCGTAG CGTTAGCAGC
TTACTAAACC ACCAACAAGA GGTGGTAGGC TCTGTGATTG TGCTTAGAGA CATAACCCAA
GAGGAGAAAT TAAAGCGGCA GCTAAGAGTC AGAGCTAACT TTGACCCAAT AACATCTCTG
CTTAATCGAA GGGCTTTTGA GGAGAGATTG ACTCACTTTA GTGAGAACGC ACACTCTCTA
GCCATCTGTT ATTTTGATCT TGAGCAATTT AAGTTAATCA ATGATTCTTG TGGTCATAGC
GCTGGCGATC AGATGTTGGC CATGGTGGCT AAAGCGATAC AGTCTTGCCT GAATAAAGAG
GATCTACTTG CGCGTTTAGG CGGCGATGAA TTTGGTTTGG CAATACGAAA TCAAAGTGCA
GTTGAAGTTG CTCAAATAGT GAAACGTGTG ATCTCCAGAG TCTCACTCCA AGTTCTACAT
CATCATGCTT GTCATTACCG CGTTGGGGTC AGTGTCGGCA TCGCAATTGC CCGTGCACCC
TATATCGCAT CAAAAGAGCT GGTGAAAGAT GCTGATATTG CTTGTTTAGC CGCGAAACGT
AAAGGGAGTA ATCAGATCCA TTTTTATGAT GATAAAGATA AGGAGTCTGT TTACCAACGT
AATGCACCCA TGTGGGCAGT GAGGATCGGA CAGGCGATTG AGCACAATGA ACTTCTTCTT
TATTACCAAG AGATCAAAGG GATGGGAGAG GGAGTCAATC GTCAGAGAAT GGAGATATTA
CTGCGTGTGC AGGAACCCTG TGGTCGGATA CTTGCCCCTG CACAATTTAT TGAAGCTGCT
GAACGCTTTA AGTTGATGAA TGAAGTTGAT AAAGAGGTTA TTCGCAAAAC ATTTCTCTGG
TTATCTTTGC ATGAAGATAT TTGGGATGAT CACTGCATTT CCATCAACCT TTCTGGTAAC
AGCTTAGGAG CGGAGGGGAT GGTTGAGTAT ATCGCTAAGC AGTATGAGCG TTTTGAGATC
CCGAGCCAGT GTATCTGTTT TGAGATAACA GAAACCAGTG CTATTCAAAA TCGTAATCGC
GCTATGGATA TGATTAATCA CCTACGCAAA CTTGGTTTTT CATTTGCCCT AGATGATTTT
GGTAGTGGCT TTGCATCTTA TGGTTATCTG AAAGAGTTGC CCGTTGATTA CGTCAAAATC
GATGGTTGTT TTGTCAAAAA TTTAGCTAAC AATGCTAAAT ATTTTGCCAT TGTAAAATCG
ATTCATGATG TATGTTGTGC CATGGGAATA GAAACTGTGG CTGAGTTTGT CGAAAACCAA
GATATTATTG ATAAATTAGA GAAAATTGGT ATTAACTATG CTCAAGGGTA CGCAATAGGC
AGGCCAAAAC CTTTAAATAA TTATGTGCAA AGTCGGACGA TTCAAGTTGA ACAAGCTAAA
CTTGTATCTG AAGTTCAACT TTTGAGCGCA TAA
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| Protein sequence | MHIGKKLIVF VVGFCLPAVI AVSYCLSMWF EHRVDRLRMN AVNAELVAIK TQLNSDIKQL
TLMADVYAVP IADLSPMSRV SLDEAWRNST ISDSLSLFYL NRGELEPFSP LYDDILSFEF
DKLPKELLSH TKRKSGVYIE DNSGFMVSQV PITDHKSVLI VRKLTEELLS SYGANDFVHK
IYFAPGPADD HYIIDGAKYI VDLDVASLLP RQDSHLEVQF STEMYNKVWL KYDLVTFGIV
GLGLLILIIG YIWLKLGLIR PFHRLMSQLA DIDPKAKAYT PIQGSGCSEL IVMADRVNTL
LARIFQQKER AKITLESIAE AVILTDTHAK VVYLNPQAER MLEIKEAKAI GAKIDTLLKA
DKTIKSALLN VMGSQVQQTI LNKHMFRTGN AKVMERSVSS LLNHQQEVVG SVIVLRDITQ
EEKLKRQLRV RANFDPITSL LNRRAFEERL THFSENAHSL AICYFDLEQF KLINDSCGHS
AGDQMLAMVA KAIQSCLNKE DLLARLGGDE FGLAIRNQSA VEVAQIVKRV ISRVSLQVLH
HHACHYRVGV SVGIAIARAP YIASKELVKD ADIACLAAKR KGSNQIHFYD DKDKESVYQR
NAPMWAVRIG QAIEHNELLL YYQEIKGMGE GVNRQRMEIL LRVQEPCGRI LAPAQFIEAA
ERFKLMNEVD KEVIRKTFLW LSLHEDIWDD HCISINLSGN SLGAEGMVEY IAKQYERFEI
PSQCICFEIT ETSAIQNRNR AMDMINHLRK LGFSFALDDF GSGFASYGYL KELPVDYVKI
DGCFVKNLAN NAKYFAIVKS IHDVCCAMGI ETVAEFVENQ DIIDKLEKIG INYAQGYAIG
RPKPLNNYVQ SRTIQVEQAK LVSEVQLLSA
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