| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0287 |
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| Symbol | hemE |
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| ID | 6114513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 354494 |
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| End bp | 355558 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641631771 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_001758683 |
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| Protein GI | 170724657 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.104978 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGAAT TAAAAAACGA TCGTTATTTA CGCGCCTTAC TAAAACAACC TGTCGACAGA
ACTCCAGTTT GGATGATGCG TCAAGCTGGC CGTTATCTTC CAGAGTACAA AGCGACACGC
GCTGAAGCTG GTGATTTTAT GTCACTGTGT AAAAATCAGG ACTTAGCTTG TGAAGTTACG
CTTCAACCAC TTCGTCGATA TGATCTTGAT GCTGCTATTC TGTTTTCAGA TATTTTGACA
ATACCTGATG CTATGGGTTT AGGTCTGTAT TTCGAAACCG GTGAAGGTCC TCGTTTCCAA
CGTCCTACCG ACACGATCGA TGCGATCAAA AAGCTTTCAA TTCCAGATCC AGAAGATGAG
CTTGGCTACG TGATGCGTGC GGTTAGCACT ATTCGTCGTG AGCTTAAAGG TGAAGTTCCT
TTGATTGGCT TCTCTGGCTC ACCTTGGACT CTGGCAACTT ACATGGTTGA AGGCGGTTCA
AGCAAGACAT TCGAAAAGAT TAAGAAGATG GCTTACGAAG AGCCAGCAAC TTTGCATATG
CTTCTCGACA AGCTTGCTGA TTCAGTGATC TTATACCTGA ATGCTCAAGT AGCAAATGGT
GCACAGTCTC TGATGATTTT CGATTCATGG GGTGGTGCGT TATCTCATCA TGCATACCGT
GAGTTCTCTC TGCGTTATAT GCAGAAGATC GTTGATGGCT TAACACGTCA TGCAGATGGC
CGCCAAGTTC CTGTAACTCT GTTCACTAAG GGTGGCGGTT TATGGTTGGA ATCAATGGCT
GAAACTGGCT GTGATGCACT TGGTTTGGAT TGGACTGTTG ATATTGGTGA TGCACGTCGT
CGTGTTGGCC ATAAAGTTGC CCTACAGGGT AATATGGACC CATCTGTACT GTATGCTTCT
CCTGAGCGTA TTCACCAAGA GGTAGATCAA ATTCTATCTA GCTATGGTGA AGGTACTGGT
CATGTATTTA ACTTAGGCCA TGGCATTCAC CAACATGTGG ATCCTGAGCA TGCTGGCGCC
TTTATCAATT CGGTACATGA GCTGTCAGCT AAATACCATA AGTAA
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| Protein sequence | MAELKNDRYL RALLKQPVDR TPVWMMRQAG RYLPEYKATR AEAGDFMSLC KNQDLACEVT
LQPLRRYDLD AAILFSDILT IPDAMGLGLY FETGEGPRFQ RPTDTIDAIK KLSIPDPEDE
LGYVMRAVST IRRELKGEVP LIGFSGSPWT LATYMVEGGS SKTFEKIKKM AYEEPATLHM
LLDKLADSVI LYLNAQVANG AQSLMIFDSW GGALSHHAYR EFSLRYMQKI VDGLTRHADG
RQVPVTLFTK GGGLWLESMA ETGCDALGLD WTVDIGDARR RVGHKVALQG NMDPSVLYAS
PERIHQEVDQ ILSSYGEGTG HVFNLGHGIH QHVDPEHAGA FINSVHELSA KYHK
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