Gene Swoo_0259 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0259 
Symbol 
ID6114482 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp315681 
End bp316988 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content50% 
IMG OID641631740 
Productamidohydrolase 
Protein accessionYP_001758655 
Protein GI170724629 
COG category[R] General function prediction only 
COG ID[COG1473] Metal-dependent amidase/aminoacylase/carboxypeptidase 
TIGRFAM ID[TIGR01891] amidohydrolase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0605709 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAGAT CTGACTTGAT TGCAGCATCT AAGCAATTAC TGCTAGCTGG AGCGGCACTC 
TCCTGTGCTT TTGGGGTGCA AGCTGATAGC GAAATCGATG TAAAACAACT TTCCCAAGAT
ATCGAACATC AGGTGATCGA ATGGCGAAGG GATCTTCATC AGCACCCTGA ACTTTCTAAC
CGAGAGTTTC GTACCAGTAA AGTGATTAAG CAACACTTGG AATCATTAGG TTTAGAGGTG
ACAAGCAATA TTGCTCATAC TGGTGTGGTT GGCATATTGA AAGGGGGCAA ACCCGGCCCC
TTAATTGCGC TGCGTGCCGA TATGGACGGA TTGCCCGTCA AAGAGGAGGT GGATCTGCCC
TTTGCCTCTA AGGCTACCGA TACCTATAGG GGCCAAGAGG TCGGTGTTAT GCACGCCTGT
GGTCACGATA CCCACGTTGC AATTTTAATG GGAGTGGCAC AAAACCTAGT GAAGATAAAA
GAGCAGTTAA GCGGTGACGT GATGTTTATC TTCCAGCCTG CAGAGGAGGG CGCGCCAGCA
GGTGAGGAGG GCGGTGCTGA GTTGATGCTT AAAGAGGGGC TGTTTGCCAA CAGAAAACCT
GAAAAGATAT TCGGTCTCCA TGTTACCTCT AGCATGCCAA CAGGGATGAT AGGCCTGCGT
GCTGGACCTG CCATGGCAAG TGAAGACTCC TTTACTATCA CAGTTAACGG TAAACAGACC
CATGGCTCTC GTCCCTGGAA TGGCGTCGAT CCTATTGTGA CCTCGGCACA AATCATCAAT
AGTGTGCAGA CCATTGTCAG CCGTCAGGTT GATGTCACAG CTGCGCCTGC TGTTGTCAGT
TTTGGTGCAA TCAATGGTGG TATACGCTCG AACATTATTC CCGATGAGGT GGAGCTAATA
GGCACCATAC GCACGTTCGA TCAGGATATG CGCGCGGATA TTAAGTTAAG ACTCGCTAAC
TCTGCAACCA TGATAGCGCA AAGCATGGGC GCTTCGGCAA CAACAAAAAT TGACCAAGGC
TATCCTGTGA CGGTCAATAA CCCCGAGTTG GTGGCACAGA TGAAGCCTGT CTTGGCGGGT
GTGGTAGGTG ATGAGATGTT GATTGAGCCC GGTTTGATCA CTGGAGCGGA GGATTTCTCC
TACTATGCAC TTGAAACCCC TGGTCTGTTT TTCTTTTTAG GGGTCACACC TAAGGGGACT
GATCATACGA CGGCGCCAAG TAATCACTCA CCTCGATTCT ATGTTGATGA GAGTGCGTTA
GTGGTGGGGG TTGAAGCTTT GACACAGCTC GCGGTGACGT CCTTATAG
 
Protein sequence
MNRSDLIAAS KQLLLAGAAL SCAFGVQADS EIDVKQLSQD IEHQVIEWRR DLHQHPELSN 
REFRTSKVIK QHLESLGLEV TSNIAHTGVV GILKGGKPGP LIALRADMDG LPVKEEVDLP
FASKATDTYR GQEVGVMHAC GHDTHVAILM GVAQNLVKIK EQLSGDVMFI FQPAEEGAPA
GEEGGAELML KEGLFANRKP EKIFGLHVTS SMPTGMIGLR AGPAMASEDS FTITVNGKQT
HGSRPWNGVD PIVTSAQIIN SVQTIVSRQV DVTAAPAVVS FGAINGGIRS NIIPDEVELI
GTIRTFDQDM RADIKLRLAN SATMIAQSMG ASATTKIDQG YPVTVNNPEL VAQMKPVLAG
VVGDEMLIEP GLITGAEDFS YYALETPGLF FFLGVTPKGT DHTTAPSNHS PRFYVDESAL
VVGVEALTQL AVTSL