Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0230 |
Symbol | |
ID | 6114453 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 282283 |
End bp | 284472 |
Gene Length | 2190 bp |
Protein Length | 729 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641631711 |
Product | TonB-dependent receptor |
Protein accession | YP_001758626 |
Protein GI | 170724600 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGACCT CAAAAATTAG TCAGCTCATT TTATTGAGCT ACCTTTTACC AAGCGCTGTG TGGGCTGCTG ACATTGAAGA AAATGAAAAA ATAGATGCCA GCAAACTAGA AGTGATTACG GTTACAGCTC AAAGGCGAGG AGAAAATATT CAGAAAGTGC CTGTTGCTGT CACAGCAATG AATGCTGAGA TGTTAGAGAA ACAAGATGTA CATGATCTCA ATACTATCGC CACGCGAGTG CCGGGATTAT CTTTCAGTCC ATTTGCACCA GGGCAAAATA TTATTAGCCT TCGAGGGGCC TCCTCAAATG ACGATGGCGC TGGCACCGAC AACTCAGTTG CAGTCTTTGT TGATGATGTC TATTTAGGTC GAGTTTCCAA CGTTAATCCT GAGATGTTTG ATATTGAACG CGTCGAAGTA CTGCGTGGTC CACAAGGTAC TTTGTATGGT AAAAACACCA TAGGTGGCGC GATTAATATT ATTTCAAAAC TGCCTAGTTT GGATGAGCTT GATGCAAAGC TTAGGCTCAA TATTGGTAAC TATGGTCGTC GTGATGTGGC TGGGTACATT AACGGTCCAC TCGGTGACAA CATCGCCGCG AAATTGAGTT TCTCAAGTCG TAAAAATGAT GGTTGGGTTG ATAATGTTAC GTTAAACAGT AAGCAAAAAG ATAATGATGT GTTTGCTGGT CGAGCTCAGC TGTTATATGA AGGCGATAAC TTTCAAGCGC TATTCAGCGG TGACTATTCC AAACTTGATG TGACTGACAT GGCGCGTACT CCAGTAGATA CAGGTGCAAA AGGTGATCCT GCCGTGTGGT CGCCTGCCTA TGTTGCCGCT TGTAAAGAGG GAGCTCCATT TTGTGCAGCT GGCGCTGTTG ATGGTTATGC TAAGCAAAAA GCCTATGGCG TTAGCGCTAA GTTAACTTGG GATCTCGATT TAGGTGAGTT GATTTCAATC AGTGCTTATC GTGACAGTGA ATCTGACTGG AATATGGATG CAACAGGTTC ACCAGCCCTC GCGCTTATCG ATGATATTAT TGATAATAGT GACCAGTTCT CGCAAGAGTT CAGGTGGGTA GGGCAAACTG ACAGCTTTAA TTATGTCGCT GGTGCTTGGT ACATGAACGA GAATACTGAT CGTAGCGAAT GCTTTGATTT AAGTCTTGAT ACCGATTGTT CAACAGGAAT GGATGGTAGT GATTTCTACC ACCAAGTCAA TGAAACCAAC AGCTACGCGT TATTTGGCCA ATTTGATTGG AAATTCACAA CAGATTGGAT ACTGACTGTA GGTGGTCGAT ATTCCTATGA AACCAAAGAG ATTGATAACG TCGCAAAGGC GGGTGATTTT GTGATTATCA ATGAGAATTT TGGTATTGAC AGTCCGGTGA CTTTAAAGGA AAGTTGGGGG GCATTTACGC CTAAAGTAGC GCTTAAATAT ACTGTTTCTG ATGACACCAC GGCTTACTTA AGCTTTGCAA AAGGTTTTAA AAGTGGTGGA TTTGCTGCAG CACCGCAGTC GTTAGCTGAA ACAAAACCGC TGGAACCAGA AGAAGCGACC AATTTTGAAT TTGGTATAAA GTCAGACATT AGTGATACCT TTCGTCTCAA CACCACTATT TTCCATACAG ACTACAAAAA TCTGCAAATT CAAAGTTTTG GTCCTAGAAG TAGTGGCGAA GATTTTGGCG TTTTCAACAC CTTCAATGCC GGTGATGCAA AAATTGATGG TATTGAATTA GAGTTCACTT GGCTACCTAC TGATAACCTC AAGCTCTATG GTTTTTATGG CTACATGGAC AGTGAATTTG TCGATACCGT GGTTCCTAAC TCTGCTTACC CAAATCAGTC CGGTCAGGAG ATGCTTAGAA CGCCTAAGAA TAAATACTCA ATCAACTTAG AGCACAATAT TGACCTCGAT TCTGGCGATT ACTTCACGAC AAACCTAAAT TATCGTTTCA CTGATGAGCA GCGTGGAGAG CTTGAACCTT ATGCCATTCA ACCTGCATTT AAGTTATTGG ATGCCAGCTT TACATGGCAT TCGGCAAACG ATAATTGGGA AGTCTCAATA TGGGGAAAAA ACCTCACTGA AGAGGTGTAC ATTACTCATG TCTACACAGT GGCTTCAAGC GTTGTTGCCG TATATGGCGA ACCAAGAATG TATGGTGTTT CAGTCTCATG GAGCATGTAG
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Protein sequence | MKTSKISQLI LLSYLLPSAV WAADIEENEK IDASKLEVIT VTAQRRGENI QKVPVAVTAM NAEMLEKQDV HDLNTIATRV PGLSFSPFAP GQNIISLRGA SSNDDGAGTD NSVAVFVDDV YLGRVSNVNP EMFDIERVEV LRGPQGTLYG KNTIGGAINI ISKLPSLDEL DAKLRLNIGN YGRRDVAGYI NGPLGDNIAA KLSFSSRKND GWVDNVTLNS KQKDNDVFAG RAQLLYEGDN FQALFSGDYS KLDVTDMART PVDTGAKGDP AVWSPAYVAA CKEGAPFCAA GAVDGYAKQK AYGVSAKLTW DLDLGELISI SAYRDSESDW NMDATGSPAL ALIDDIIDNS DQFSQEFRWV GQTDSFNYVA GAWYMNENTD RSECFDLSLD TDCSTGMDGS DFYHQVNETN SYALFGQFDW KFTTDWILTV GGRYSYETKE IDNVAKAGDF VIINENFGID SPVTLKESWG AFTPKVALKY TVSDDTTAYL SFAKGFKSGG FAAAPQSLAE TKPLEPEEAT NFEFGIKSDI SDTFRLNTTI FHTDYKNLQI QSFGPRSSGE DFGVFNTFNA GDAKIDGIEL EFTWLPTDNL KLYGFYGYMD SEFVDTVVPN SAYPNQSGQE MLRTPKNKYS INLEHNIDLD SGDYFTTNLN YRFTDEQRGE LEPYAIQPAF KLLDASFTWH SANDNWEVSI WGKNLTEEVY ITHVYTVASS VVAVYGEPRM YGVSVSWSM
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