Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0216 |
Symbol | |
ID | 6114439 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 268302 |
End bp | 269237 |
Gene Length | 936 bp |
Protein Length | 311 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 641631697 |
Product | PaaX family transcriptional regulator |
Protein accession | YP_001758612 |
Protein GI | 170724586 |
COG category | [K] Transcription |
COG ID | [COG3327] Phenylacetic acid-responsive transcriptional repressor |
TIGRFAM ID | [TIGR02277] phenylacetic acid degradation operon negative regulatory protein PaaX |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0165647 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCGTCAG AAGACAATTA TTTAAAATTC ATTAATCAAA GAGTTGAGAA GTCCAGTAGT GGCCCCTCTA TGCTTGTGAC GCTATTTGGT GATTTAGTGT CTCAGCATGG GAATTGGATT TGGCTTGGCA GTTTAATTAC CGGGTTAAAG CCCTTTGGCT ATAGTGAGCG ACTCATTAGA ACCAGTGTAT TTAGATTAGT TAAAAGCGAT TGGTTGATCA CCAAAAAAGT AGGGCGTCGA ACCTATTACG CATTAAGTGA GACGGCAAAA GCCCATCATG ACAAAGCAGC AAGAAGAATT TATTCCTCTG AACCTTCGTC ACTAGCCGAT GCTTGGACAG TGGTCATTCC AATATTTGTA CCCGATAACG TAAAAGAGAC ATTTAAGAAG CAGTTGCAGT GGTTGGGATT TAGTCCTTTG ACCAACGGCG CTTATGCGCA TCTTGAGGTT GATAAACAGA GTTTAGAAGA CACCTTATTA GAACTCGGCT TGAAAGATGC CGTCATCGTG TTGAGTTGCA AAGTCGATGG TTCACATTCT AAAAATGTCT TTAAGCGTTT AGTTAAAGAG TATTGGGGCC TTGAAACCCT AGAGGCGAGT TACAAAGAGT TTCTTGATGC GTACCGACCT TTAATCATCA AATTTAATAA AGGGAAGATG CCAAGTGATG AAACTTGTTT TCTTCTCAGA ATACTCCTGA TCCATGAGTA CAGACGAATC CTTTTGAAAG ATAAGCAGTT ACCAGAAGAC ATGTTACCCA ATGGTTGGGT TGGGTTTGAA GCCCACGAAT TGGTCGGAAA ATTATACGCC CAACTAGCTC AAGCATCTGT CAATTATGCG GTTGAAAATT TGGAGAATGC TCAAGGGCAC TTACCCTATG TTTCAGCTAA ATTCTGGCAA CGATTTTTAC TTAATAAATT GTCCGTAGAG CCATAA
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Protein sequence | MASEDNYLKF INQRVEKSSS GPSMLVTLFG DLVSQHGNWI WLGSLITGLK PFGYSERLIR TSVFRLVKSD WLITKKVGRR TYYALSETAK AHHDKAARRI YSSEPSSLAD AWTVVIPIFV PDNVKETFKK QLQWLGFSPL TNGAYAHLEV DKQSLEDTLL ELGLKDAVIV LSCKVDGSHS KNVFKRLVKE YWGLETLEAS YKEFLDAYRP LIIKFNKGKM PSDETCFLLR ILLIHEYRRI LLKDKQLPED MLPNGWVGFE AHELVGKLYA QLAQASVNYA VENLENAQGH LPYVSAKFWQ RFLLNKLSVE P
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