| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0190 |
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| Symbol | |
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| ID | 6114413 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 231234 |
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| End bp | 233033 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641631671 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001758586 |
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| Protein GI | 170724560 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCAAT TAGAGATGAA CAATAAACGC AACAAATTAG CCTATCTGCT GAGCCTTTTT
ATGGTGGTCA CTCCGCAGCT AGCCCACTCT CAATCGTTAT TAGCGCAAAC AGCGCCAGAG
CCAAAACATG TAGCGCATAA CCACAGTCAT GGCTCAGCAA CTTATGTGTG CCCTATGCAC
CCTAATGAAA CCAGTCATGA AGCTGGCAGT CGCTGCTCCA TCTGCAACAT GTTCCTTGTG
GAAGCTGAAG AGGAAGGGGA AAAGGGGTCA CATGGTGATC ACTTAGCCAT GGAGCAGAAA
GCCTATGTTT GCCCTATGCA TCCAGATGAA ACCAGTCATG AAGCTGGCAG TCGTTGCTCC
ATCTGCAACA TGTTCCTTGT GGAAGATGAA GAGGAAGAGG AGAAGGGGTC ACATGGTGAT
CACTTAGCCA TGGAGCAGAA AACCTATGTT TGCCCTATGC ATCCAGATGA AACCAGTCAT
GAAGCTGGCA GTCGTTGCTC CATCTGCAAC ATGTTCCTTG TGGAAGCTGA AGAGGAGGAG
GAAAAGGGGG AGATAGATCA CTCTAACCAC GATATGAGTG CCATGCCTGC AGATGAACAC
TCAGGACATT CACACCAAGC AGCAAGCACT CCTGCAGATG CTGTATTTAA TGCAGCAGAG
CCTACGCCAT TAAATGATGG CGGCAGTATC AAATATGTCT GTCCTATGCA TGCACATATT
ATCAGCGATG TGCCAGGGAC ATGTCCTATC TGTGGCATGA ACTTGGAAAA AGTTGAAGTA
GGAGGCAGCA GTAAAGAGAT ACAGATAGAT GTATCCGGTG GCATGCAGCA GGCACTCGCC
CTGAAAGTCG CTAGAGTCGA GAAAGACACC CTATGGAAGT TTGTTCAAAC CGTAGGTCAG
GTTGATTACG ATGAGAGCCA GATCAATCAC ATACATGCAC GCGTCAATGG CTGGATTGAG
AAGTTAACCA TTACCTCTGT CGGTGACAAG ATAACCAAAG GTCAGCTTCT CTATGAGATC
TACTCCCCTG AGCTTATCAA CGCACAGGAT GATTTCCTGC TTGCTCAGGA TACCGTCAAA
CGAGCGGGCA AAGATGCAAA TTACCAAGAT CTCGTCAGAA AAGCGGGGCT CAGATTGGAG
CTTCTTGGGT TTCAACCTTA TCAGATAAAA GCGTTAGCAA AATCGAAAAA AACCCAATAC
CGGGTCCCCT TTTACGCCAA GAGTGATGGC ATAGTAAAAG CCTTAAATGT CAGAGATGGT
ATGTATATCC AACCCGCCAC CGAAGTCATG TCCGTCGTCG ACCTTTCTAA AGTTTGGGTT
ATTGCCGACG TGTTTGAAAA TGAGCAGAGC TGGCTAGCTG TTGGACAAAA AGCGGAGATC
TCCGTCCCAG CGATGGGAAT TAAAGGTATC GAAGGTGAGA TTGACTACAT TTACCCCGAA
CTTGATCCCG TCACCCGTAG TTTAAGAGTT CGTATCGTAG TATCAAATAC TGATATTGAG
CTCAGACCCA ATACTCTAGC TAAAATTGGG ATCTTCGGCG GTCCCAATAA AGATGTGCTT
GTGATACCTC AAGAGGCGCT GATCCAAACC GGCAAAGAGA ATCGTGTCAT CGTTAAACTC
GAAGATAATA ACTTTACCGC CCGCAAAGTG ACTGTAGGTA TGTTAAGCCA AGGGAAAGCT
GAGATAAAAG AGGGGCTTGC TGAAAATGAG CGTGTCGTGA CCTCTGGTCA GTTCCTGCTC
GATTCAGAAG CCAGCCTAAA AGGCAGCTTA ATGCGCCTTA GCAGCGGCCA CCAGCACTAG
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| Protein sequence | MSQLEMNNKR NKLAYLLSLF MVVTPQLAHS QSLLAQTAPE PKHVAHNHSH GSATYVCPMH
PNETSHEAGS RCSICNMFLV EAEEEGEKGS HGDHLAMEQK AYVCPMHPDE TSHEAGSRCS
ICNMFLVEDE EEEEKGSHGD HLAMEQKTYV CPMHPDETSH EAGSRCSICN MFLVEAEEEE
EKGEIDHSNH DMSAMPADEH SGHSHQAAST PADAVFNAAE PTPLNDGGSI KYVCPMHAHI
ISDVPGTCPI CGMNLEKVEV GGSSKEIQID VSGGMQQALA LKVARVEKDT LWKFVQTVGQ
VDYDESQINH IHARVNGWIE KLTITSVGDK ITKGQLLYEI YSPELINAQD DFLLAQDTVK
RAGKDANYQD LVRKAGLRLE LLGFQPYQIK ALAKSKKTQY RVPFYAKSDG IVKALNVRDG
MYIQPATEVM SVVDLSKVWV IADVFENEQS WLAVGQKAEI SVPAMGIKGI EGEIDYIYPE
LDPVTRSLRV RIVVSNTDIE LRPNTLAKIG IFGGPNKDVL VIPQEALIQT GKENRVIVKL
EDNNFTARKV TVGMLSQGKA EIKEGLAENE RVVTSGQFLL DSEASLKGSL MRLSSGHQH
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