Gene Swoo_0182 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0182 
Symbol 
ID6114405 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp221045 
End bp222301 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content46% 
IMG OID641631663 
Productaromatic amino acid transporter 
Protein accessionYP_001758578 
Protein GI170724552 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0814] Amino acid permeases 
TIGRFAM ID[TIGR00837] aromatic amino acid transport protein 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAATC ATATGAATGC AGCCAAAGAT AAGGCTGCGG GTAAGTCTCT GCTTGGCGGA 
GCGATGATAG TTGCGGGTAC AGCGGTTGGT GCAGGAATGT TTTCCCTGCC TGTTGTTGGT
GCCGGTATGT GGTTTAGCTA TTCAATTCTA ATGATGTTAG GTGTCTGGTT CTGTATGCTG
GTTTCCGGCT TACTACTACT TGAAACCAAC CTTCATTTCG AGCCTGGCTC GAGTTTTGAT
ACCTTGACGC GTGAAACTTT AGGTCAGTTT TGGCGAATAG TGAACGGCTT ATCTATCGCC
TTTGTGCTCT ATATTTTAGC CTATGCCTAT ATCAGTGGCG GTGGCTCTGT CGTTAACCAT
AGTCTGCAAG TGTCAGGTAT CGAGTTGCCT CAAAGCCTTG CTGGCTTAGT TTTCGCCTTA
GGTTTGGCGT TTATTGTTTT TATCAGCACT AAGGCTGTCG ATAGGATCAC CACGATCATG
CTCGGGGGGA TGATCATCAC CTTCTTCCTT GCAATCGGTG ATCTGCTGAT CGATATCGAT
ACAGTGAAGT TGTTTGCACC TAATGGCGAG GACACTTATC TACCTTACAT TTTAGCTGCA
CTGCCCTTTG GTCTTGTGAG TTTTGGCTAT CACGGTAATG TGCCGAGCCT GGTTAAGTAT
TACGGCAAAA AGCCTAATAC GATCATCAAG GCGATACTGA TCGGCACCTT GATCGCATTT
GTTATCTATG TCTGCTGGTT AGTGGCTACC ATGGGGAATA TTGCCCGTGG TGACTTCGTT
AATATTATCG CCCAAGGCGG TAATATGGGG GTCTTGGTTT CGGCTCTGTC TGATGTGATG
AGCAGTAGCT GGTTAACTAC CATGTTAACG ATTTTTGCAA ATCTAGCCGT TGCTTCTTCG
TTCCTAGGGG TTACCTTAGG TTTGTTTGAT TTTCTGGCCG ATCTTTTTGG CTTCGATGAA
TCCAGAGGTG GACGCTTTAA AACGGCCGCA GTGACCTTCC TACCACCGAC AGTGCTTGGA
TTACTTTTCC CGAATGGCTT CTTGGTTGCC ATCGGTTTTG CAGCACTTGC GGCGACAGTT
TGGACTGCGA TTGTACCAGC AATGATGGTG TACAAGATTA GAAAGAAGTT TCCTAATTCG
ACCGGTTTTA AAGTTCCTGG CGGTAATGCG GTGATTGTCA TCGTAATGTT GTTCGGTATT
ATTACCGGAG CCTGTCATTT ATTAGCGATG GCGGATCTAC TGCCTGTATA CGGGTAA
 
Protein sequence
MANHMNAAKD KAAGKSLLGG AMIVAGTAVG AGMFSLPVVG AGMWFSYSIL MMLGVWFCML 
VSGLLLLETN LHFEPGSSFD TLTRETLGQF WRIVNGLSIA FVLYILAYAY ISGGGSVVNH
SLQVSGIELP QSLAGLVFAL GLAFIVFIST KAVDRITTIM LGGMIITFFL AIGDLLIDID
TVKLFAPNGE DTYLPYILAA LPFGLVSFGY HGNVPSLVKY YGKKPNTIIK AILIGTLIAF
VIYVCWLVAT MGNIARGDFV NIIAQGGNMG VLVSALSDVM SSSWLTTMLT IFANLAVASS
FLGVTLGLFD FLADLFGFDE SRGGRFKTAA VTFLPPTVLG LLFPNGFLVA IGFAALAATV
WTAIVPAMMV YKIRKKFPNS TGFKVPGGNA VIVIVMLFGI ITGACHLLAM ADLLPVYG