Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0160 |
Symbol | |
ID | 6114383 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 196145 |
End bp | 197479 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641631641 |
Product | MATE efflux family protein |
Protein accession | YP_001758556 |
Protein GI | 170724530 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCCTG TTGAACTTCT CTTAAACAGA CAGAAAAACA AACAGTTATT GGCACTCGCT CTGCCCATGA TATTGTCCAA TATCACAGTC CCTTTACTTG GGCTTGTGGA CACAGCTGTA GTGGGTCATT TAAGTAATGC CTACTATCTA GGCGGTGTAG CTGTTGGCTC AACTATCATC ACACTTATAT TGTGGATGCT AGGCTTTTTA AGGATGGCTA CAACAGGCTT AGTCGCGCAA TCCTTTGGGG CGGGAGACAC ACAAACCCAA TACAAATTGT TACTTCAAGC GGGAAGTTTA GCGCTTATTT TAGGTGTAAC TGCGGTAGTA CTGCAACTCC CCATTCTCAA TGGCGCATTA TCACTCACAG ATGCCAGTGC TGAGGTCGAA CGCTATTGCC GCGAGTATTT CAGTATCAGG ATCTGGTCAA CCCCATTTGC ACTGCTCAAT CTGGTTCTTT TGGGCTGGTT ACTTGGCAGG CAACAACCTA GAGCCGCAAT GTGGCAACTC ATTGTCGCTA ACTTAGCCAA TATAGGGCTC GATGTTCTAT TCGTTCTAGG TTTAGGCTGG GGAGTCAAAG GTGCTGCACT CGCTTCAGTT TTTGCCGATA TGGCTGGTTT CCTTGTCGCC TTTACCATGG TTTATAAAGA GCTAAATAAA ATAGGAAACT TCAAATTTTT AGCGCTATGT AAAGAGCTGA ACATCAGCAG TTATCACAAA CTACTTACCC TTAATGCTGA TATATTTATT CGCAGCTTAT GTTTGCAACT ATCTTTTGCC TTTATGACAT TTCAAGGCGC AGGATTAGGA GATAAAACCG TTGCAGCAAA CGCTGTGTTA CTGAATCTAT TACTGCTTAT CTCCTACGCG TTAGATGGTA TTGCTTATTA TGCTGAAGCG GAAGTTGGCC GCGCTTATGG CCAGAAAAAC AGAAAGTTAA TGCAAGAGAG TGTCACTTTA GCCTGGCTCT GGTCTGGAAT TTCCGCGGTC TTATTCACGC TACTTTTCGC CTTTGGAGGA GAGAGTATCA TCAGGCTACT AACCAGTATC GAAGATGTGA GATTAGTCGC TAGTGAGTTT CTTTTCTGGG TGGTACTGCT TCCGCTACTC TCATTTGGCT CCTATCTTTT TGATGGTGTA TATATTGGGG CCGCTAAGGG CAAGGTCATG AGAAACAGCA TGATAATATC CACATTCGGG ATATTTTTCC CCGTATGGTT TCTGCTGCAA GATAACGGCA ATCACGCCCT ATGGGCAGCC ATGAGCGCGT TTATGTTGGC AAGAAGTCTA ACGCTAACAC TCCACTATCG ATACCGCTTA AGTAAAGTTA TCTAA
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Protein sequence | MTPVELLLNR QKNKQLLALA LPMILSNITV PLLGLVDTAV VGHLSNAYYL GGVAVGSTII TLILWMLGFL RMATTGLVAQ SFGAGDTQTQ YKLLLQAGSL ALILGVTAVV LQLPILNGAL SLTDASAEVE RYCREYFSIR IWSTPFALLN LVLLGWLLGR QQPRAAMWQL IVANLANIGL DVLFVLGLGW GVKGAALASV FADMAGFLVA FTMVYKELNK IGNFKFLALC KELNISSYHK LLTLNADIFI RSLCLQLSFA FMTFQGAGLG DKTVAANAVL LNLLLLISYA LDGIAYYAEA EVGRAYGQKN RKLMQESVTL AWLWSGISAV LFTLLFAFGG ESIIRLLTSI EDVRLVASEF LFWVVLLPLL SFGSYLFDGV YIGAAKGKVM RNSMIISTFG IFFPVWFLLQ DNGNHALWAA MSAFMLARSL TLTLHYRYRL SKVI
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