| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0131 |
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| Symbol | |
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| ID | 6114354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 158355 |
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| End bp | 159506 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641631612 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001758527 |
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| Protein GI | 170724501 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000302028 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGGCAAA TAGTGAAAAT TGCCTCTGTT ATAAGTGTGG CGTTATGGAT AACTGGCTGT
GACCAAAAAC CAGAAGGTTC AGGTACAGCT GCAGGCCCAC AAAGTGTACC TGTAAATGTG
ATAAAAGTGG CAACTCAACC TCAGGAGATC ACCTTAGAGT TGCCAGGCCG AAGCCGTGCG
TATTTAGAAG CAGAAGTGCG TCCACAGGTC AGTGGTATTG TACTGGCTCG TAGTTTTAAT
GAGGGTGGAG AGGTCAAGAA AGGCCAGTCT CTTTATCAAA TTGATGCGTC GCAGTATGAA
GCTGCGCTAG TGAGTGCGAA GGCCGAGCTA GAGCGCGCAC AGGCAGCTGA AAAGTCGACT
AAGGCAACGG CTAAACGTTT TAGCTCACTG ATTAAAAGTA AATCTATTAG TCAGCAAGAC
TTTGATACTG CAGAGGCTAA CTACCTAGAA GCTAAAGCCA GCGTTGCTGT TGCAAAAGCG
GCAATTAACA CTGCTGAAAT TAACCTTGCA TACACTAAAG TAGAATCACC AATTTCAGGC
CGTATCGGCA AATCTAACGT GACTGCGGGT GCGCTAGTTG GTGCAGGTCA AGCGCAAGCA
TTAGCCAATA TTTCACAGCT TGATCCGATT AATGTTGATA TCGTTCAATC GAGCACGCAG
ATGCTACGCC TTAAGCAACG TATCGCCAGT GGCCAGTTGT TGAATGATAA TACAGCTCCA
GTTGCCCTGT TTTTGGAAGA TGGCAGCCGT TACAGCCATA AAGGTAAGCT GCAGTTCGCA
GAAGTTACCG TCAATGAAAA CACCGGTGCC GTGGTATTAC GTGCTGAGTT CCCTAACCCG
GATGGTTTAC TACTACCTGG TATGTTTGTT CGTACTGTAC TGACAGTGGG AACAGACCCT
GAAGCGATTT TGGTGCCGCA AAAAGCCGTG ACTCGTAACC CTAAGGGGCA GGGTGTTGCA
ATGGTGGTCA ATGCTGAGAA CAAGGTTGAG CCTCGTATTG TAGAAACTGC TGAGGTTATC
AATCATCAGT GGCTGATCAC TAAAGGCTTA GAGGCTGGCG ACCAACTGAT TGTTGAAGGT
CTGCAGAAGA TACGTCCTGG TGCGCCAGTT ACACCTCAGT TAATTTCTGA AGCGAAAGCT
CAAGCAGAAT AG
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| Protein sequence | MRQIVKIASV ISVALWITGC DQKPEGSGTA AGPQSVPVNV IKVATQPQEI TLELPGRSRA
YLEAEVRPQV SGIVLARSFN EGGEVKKGQS LYQIDASQYE AALVSAKAEL ERAQAAEKST
KATAKRFSSL IKSKSISQQD FDTAEANYLE AKASVAVAKA AINTAEINLA YTKVESPISG
RIGKSNVTAG ALVGAGQAQA LANISQLDPI NVDIVQSSTQ MLRLKQRIAS GQLLNDNTAP
VALFLEDGSR YSHKGKLQFA EVTVNENTGA VVLRAEFPNP DGLLLPGMFV RTVLTVGTDP
EAILVPQKAV TRNPKGQGVA MVVNAENKVE PRIVETAEVI NHQWLITKGL EAGDQLIVEG
LQKIRPGAPV TPQLISEAKA QAE
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