| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0093 |
|---|
| Symbol | |
|---|
| ID | 6114316 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 114092 |
|---|
| End bp | 115450 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641631574 |
|---|
| Product | isochorismate synthase |
|---|
| Protein accession | YP_001758489 |
|---|
| Protein GI | 170724463 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1169] Isochorismate synthase |
|---|
| TIGRFAM ID | [TIGR00543] isochorismate synthases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.229971 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCTGTCT ACTCGTTGTC ACAGGCTATT GCCTCTCTTA CTGACACTTT AAAACAACTC
AAATTTCAAA CACAAAGCGA TCCTATCATT CAACTGTCTG TGTCTATTAA GCCTGTTCCA
GCCATCGCTT GGCTTGCAGC TCAACCTTGC TACCCAAGGA TCTATTGGAA GGGCAGAGAC
ACGGAAGAGG AAGTGGCAGC GATCGGTTGC TGTAAAGATT TCTTCTACGC AGATAATATT
GATGATAATC AACTCTCTAT TGAATATCAG AAGCAAAGAG CGCTCTCAAA CAATCAAGAT
ATCCGTTATT ACGGTGGCGT TGCTTTCGAT AGAACCACAG AGTGTTGGCC TGAATTTGGC
CGTGCCCACT TTGTCCTTCC TCGGGTCGAG CTTAGGCGTC ATGGTAACGA CTACAAGCTG
CTGGTAAACC TAAACTGCGA AACGGGTAAC GCCGAATCAG AACGCGATCA GGCCATGACG
AGCTTAGCTC AGCTTGCTTC TCCAAAGCCT CTACCACCAC CAAACAAGAT AAATATCTTA
AGTCGTAGCG ATCGACCAGA CCGCTACCGC TGGACTGAAC TGGTTAATCA GGTCACTCAT
CAAAAGTTTA TCCAAGAGAC CCCTAAGGTT GTGCTCTCCC GTTTAACTCA ACTTGAGATA
AATCAACCTG TCGATCCTTG GATGCTACTT GCTTGTTGGC AAGGGCGGAA TAAAAACAGT
TTTCAGTTTG GCTTTCAGTT TAGTCCCGAT AGCACCTTTA TCTCCTGTAC TCCGGAGCGG
TTATATCGGC GTAGACAAAG AGAGCTATTC ACCGAGGCTC TGGCAGGCAC CACTACCAGA
GGTTTGAACC TTGAAGAGGA CAAGGTGCTT GCTCAGACAC TGATGGAAGA TAATAAGAAT
AGCCATGAGA ACCGATTGGT CAAAGATCAT ATTGTCGATG CGCTAACACC TCTGAGTAAT
TATGTGGGTG CAGAGAGCAT TCCTAAAGTG TTTAAGCTCA GTCACATTCA GCACCTTCAT
CGCTCAATTC GTGCGGAGTT AAAGCCTGGG GTTGATGACT TTCAGTTACT TCAAGCGCTA
CATCCAACAC CGGCAGTTGG TGGTTTACCC AAAGAGCCTG CCATGAGTTT TATTCGCCAA
AGTGAAGGCT ATGCCAGAGG TTGGTATGCG GGGGCATGTG GTTACTTTAA CAAGTACGAG
AGTGAATTTG CTGTGGCGAT TCGCAGCGCG CTAATCGAAC CTGGTCGTAT CAACTTGTTT
GCTGGAGCAG GCATAGTGTC AGGATCTGAG GCCGACTCTG AGTGGATAGA GCTGGAGAAT
AAACTCACCA CCATACTCTC AATTCTTACC GAGCTTTAA
|
|---|
| Protein sequence | MAVYSLSQAI ASLTDTLKQL KFQTQSDPII QLSVSIKPVP AIAWLAAQPC YPRIYWKGRD
TEEEVAAIGC CKDFFYADNI DDNQLSIEYQ KQRALSNNQD IRYYGGVAFD RTTECWPEFG
RAHFVLPRVE LRRHGNDYKL LVNLNCETGN AESERDQAMT SLAQLASPKP LPPPNKINIL
SRSDRPDRYR WTELVNQVTH QKFIQETPKV VLSRLTQLEI NQPVDPWMLL ACWQGRNKNS
FQFGFQFSPD STFISCTPER LYRRRQRELF TEALAGTTTR GLNLEEDKVL AQTLMEDNKN
SHENRLVKDH IVDALTPLSN YVGAESIPKV FKLSHIQHLH RSIRAELKPG VDDFQLLQAL
HPTPAVGGLP KEPAMSFIRQ SEGYARGWYA GACGYFNKYE SEFAVAIRSA LIEPGRINLF
AGAGIVSGSE ADSEWIELEN KLTTILSILT EL
|
|---|
| |