Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0089 |
Symbol | |
ID | 6114311 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 108979 |
End bp | 111096 |
Gene Length | 2118 bp |
Protein Length | 705 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641631569 |
Product | integral membrane sensor signal transduction histidine kinase |
Protein accession | YP_001758485 |
Protein GI | 170724459 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0206322 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTTTCT TCCCACGAAT TTTTGGCATT AACTGGCAGC AGATGCAGGC AAAGGTGCGT TATCGCATCT TGATTTTAAC CTTGCTCCCG ATATTGTTAA CCTTGGTAAG CTTAGTGTTT ATCACCATCT ACTGGAACAT TAGCTACACG GGCAAGCAGC TGTTTATGAA GGTGAAAGCT GATCTTACTG TTGCCAATAA CACCTTAATT TCAGTGCAGC GCAGTCAAGA GAAGCAGCTT GAGATGGTGA TGGAATCTTG GCCATTTCAA AATGACTTTA GATTGTTTTC CGGCACTAAA CAAAAATATA GAGATGAGAT AGATAGTTTA CTCGAAGAGC GAAAAGAGCA GCTTAATTTA GACTTTTTAC GGTTAGTGAG TGTCTCTGAA GCGGCAGCCG ATCCCGATCT TCGTCAGATG TTGCAGCGAG TGAATGGGGT CACTCCCTTT TCTGGGTTGA TGGTGTTATC ACCGGAGCGT CTAGCCAGAA TTGATCCTGA GTTGGTTAAG CTTGCCAGTA TCCCCCTTGT TGAAACGCCT AGATCTCAAA AGCCAAGTAA GAGTGTGGAG GAGCGGGGGA TGTTGAGCCG TAGCCTGCTC CCTGTGCCCG ATGCACATGG TAATGTCTCC TGGTATCTCG ATGGCGGTAT TTTATTTAAT CGCGATATCC GTATTGTCGA TCATATTCGC GATCTGGTTT ATGACAAGGG CACACTTCCT GAACGCTCTA TAGGTACTGT CACTATCTTC CTCGACAATA CCCGCATTAG CACCAATGTA CCGCTGCACT TTTTCCCCCA AGGCGATCAA TCCGTTGGTC GAGCCTTAGG TAGCTTGGTC TCTGAGGAGG TGAAGTCAAA AGTGTTAACT CAGGGGATGC TTTGGGTCGA TCGCGCTTTT GTATTTAATG ATTGGTTTAT CTCGGCTTAT GCGCCCCTTG AAGATGTGCA GGGCAAGCGA GTTGGCATGA TCTACACAGG ATTTTCAGAA TCGCCTTTTA TCCATAATTA TCTACTGAAT ATTATCGAAT TAGGTACCAT CTTGATGTTG GTACTGCTGG TATCGGGACT GTTGGTTTAT CGAGGGGCGT ACAGTTTACT TCAGCCTATT GAGCGTATTC ACCATGTTGT TAAGGCGGTG CAGTCGGGAC GTAACTTACG TATTGGCTCA CTAGGGCTAG AGCGTGACAA TGAGCTATCC AATTTGGCGG AGCAGTTTGA TCGCATGTTG GATCTGCTGC AGAAGCGTAA TACTCAGATC CAAGCGGCAG CAGAGCAGCT TGAGGTGAAG GTGGAGGAGC GCACGCGCAG TCTTCAGGAG AAGACGGTTG AGCTACAAAA TAACGTCGAG CTGTTAAATG AAACCAGACA GCAGTTGGTG ACCAATGAAA AGCTTACCGC TTTGGGTGAG TTAACGGCGG GTATCGCCCA TGAGATCAAT AACCCAACAG CGGTTATCTT GGGAAATATG GAGCTGCTTA AGTTTGAATT GGGACAGAAC GCCGATTGTG TTGAGGAGGA GATCGAGCTG GTTATCCAGC AGGTGGGACG AATTAGCACT ATTATTCGTA GTCTTCTGCA GTACAGCCGA CCAGGAGAGT TCAATGCGCC TTTAGAGATG CATCAACTCA CCCCTATTAT CGAAGAGATG TTGGTGTTGG TTAGGCACTC GATTAAGGAG CAGAAGGTGG TGCTGACTCA GGAGCTCAAT GCCAGTTACC CCATTGAGGT TAATCGTCCT CAGCTGCTTC AAGTATTGAT TAATTTAGTG GTCAATGCTG CCCATGCGAT GAATGAAGAT GGACGCATCT GGATACGCAC CTATGACTGG GTTGTGAAGG ATGAGCCTAT TGGTGTGAAG ATAGAGGTGG AAGATGAAGG TAAGGGGATC CCTAAGGAGC AACTTAATCG TATCTTCGAT CCTTTTTATA CCACCAGAGC CGATGGGACA GGATTAGGCT TGTCTCTGAG TTACGGGATC ATCAAGCGTA TTGGTGGCAC CATAGAAGTG AGCTCCACCG TGGGCAAGGG GACGCTATTT ACCATAGGTC TCTACCATAA AGCTAAAGAA GATCAGAATG ACACCCCCTA CAAAGGGCTG CATTTTAACG AGAGTTGA
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Protein sequence | MSFFPRIFGI NWQQMQAKVR YRILILTLLP ILLTLVSLVF ITIYWNISYT GKQLFMKVKA DLTVANNTLI SVQRSQEKQL EMVMESWPFQ NDFRLFSGTK QKYRDEIDSL LEERKEQLNL DFLRLVSVSE AAADPDLRQM LQRVNGVTPF SGLMVLSPER LARIDPELVK LASIPLVETP RSQKPSKSVE ERGMLSRSLL PVPDAHGNVS WYLDGGILFN RDIRIVDHIR DLVYDKGTLP ERSIGTVTIF LDNTRISTNV PLHFFPQGDQ SVGRALGSLV SEEVKSKVLT QGMLWVDRAF VFNDWFISAY APLEDVQGKR VGMIYTGFSE SPFIHNYLLN IIELGTILML VLLVSGLLVY RGAYSLLQPI ERIHHVVKAV QSGRNLRIGS LGLERDNELS NLAEQFDRML DLLQKRNTQI QAAAEQLEVK VEERTRSLQE KTVELQNNVE LLNETRQQLV TNEKLTALGE LTAGIAHEIN NPTAVILGNM ELLKFELGQN ADCVEEEIEL VIQQVGRIST IIRSLLQYSR PGEFNAPLEM HQLTPIIEEM LVLVRHSIKE QKVVLTQELN ASYPIEVNRP QLLQVLINLV VNAAHAMNED GRIWIRTYDW VVKDEPIGVK IEVEDEGKGI PKEQLNRIFD PFYTTRADGT GLGLSLSYGI IKRIGGTIEV SSTVGKGTLF TIGLYHKAKE DQNDTPYKGL HFNES
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