Gene Swoo_0087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0087 
Symbol 
ID6114309 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp106500 
End bp107312 
Gene Length813 bp 
Protein Length270 aa 
Translation table11 
GC content43% 
IMG OID641631567 
Productextracellular solute-binding protein 
Protein accessionYP_001758483 
Protein GI170724457 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2998] ABC-type tungstate transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAAACC TTAAATCTAT CTTCAGCTTA GCTTTAGCTG CAACTCTAGT CACAGCTATG 
CCTGCAACAG CAGAAGAGAT TATCAAGTTA GCGACAACAA CCAGTACAGA GAACTCAGGT
TTATTGAAAA ACCTACTGCC TAAATTTGAA GCAGAAACTG GTTATAAAGT ACAAGTGATA
GCAACAGGCA CAGGCAAAGC ATTAAAACTT GCTCGCCAAG GCGATGTGGA TCTAGTGATG
ACTCACGCGC CAGCGGCTGA AGCAAAATTC GTTAACGAAG GCTTCGGAAT TTTGCCTCGT
GGCATTATGG AAAACGATTT TGTGATCTTA GGCCCTAAAA ATGACCCAGC TAAGATCCGT
GGCAGTAAGA CAGCAGAGGA AGCATTTGCT AAAATAGCCA AGTCTGGCGC CACCTTTATC
TCTCGTGGCG ATAACTCTGG CACTAACATG AAAGAGTTAA TTATCTGGAA AAATGCCGAT
ATCGCGCTGA CTTTTAATGG CTACAAAGCC GTAGGCCAAG GCATGGGTAA GACACTATTA
ATGGCTAGCG AGCTTCAGGG TTACACCCTG TCAGATCGTG GTACATTTGT AGCGTATAAA
GCAAAATTAG ATCTTGCGAT TGATTATGAT GGCGGTAAAG CACTAGCAAA CCCTTATCAG
ATCGTATTAA TTAACCCAGA AAAATACCCT GAACTGAATC ATAAAGGCGC ACGTGCCTTT
AGTGACTGGT TAATCGGTGC TGAAGCTCAA GGCATGATTA ATAGCTATAA GGTTCAAGGT
GAGCAACTAT TTAAGGCAAC ATATAGCGAA TGA
 
Protein sequence
MLNLKSIFSL ALAATLVTAM PATAEEIIKL ATTTSTENSG LLKNLLPKFE AETGYKVQVI 
ATGTGKALKL ARQGDVDLVM THAPAAEAKF VNEGFGILPR GIMENDFVIL GPKNDPAKIR
GSKTAEEAFA KIAKSGATFI SRGDNSGTNM KELIIWKNAD IALTFNGYKA VGQGMGKTLL
MASELQGYTL SDRGTFVAYK AKLDLAIDYD GGKALANPYQ IVLINPEKYP ELNHKGARAF
SDWLIGAEAQ GMINSYKVQG EQLFKATYSE