| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0064 |
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| Symbol | tdh |
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| ID | 6114286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 78097 |
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| End bp | 79122 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641631544 |
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| Product | L-threonine 3-dehydrogenase |
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| Protein accession | YP_001758460 |
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| Protein GI | 170724434 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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| TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase
[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00353875 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000014689 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGAAAGCAC TAAGCAAGCT TAAACCAGAA GAGGGGATCT GGATGGTCGA TGCTCCGAAA
CCGGAGATGG GCCATAATGA TCTACTGATT AAGATTAGAA AAACCGCTAT TTGCGGCACT
GATGTCCATA TCTACAACTG GGATGAGTGG TCACAGAACA CGATTCCAGT GCCTATGGTC
GTCGGTCATG AATATGTCGG TGAAGTTGTC GATATCGGCC AAGAGGTCCG TGGGTTCTCT
ATTGGCGATC GCGTTTCTGG CGAAGGGCAC ATCACCTGTG GTCACTGCCG TAACTGTCGT
GCAGGCCGTA CTCACCTATG TCGTAACACG TCAGGCGTGG GCGTTAATCG TGATGGTGCC
TTTGCCGAAT ACTTAGTGAT CCCGGCATTT AACGCCTTTA AGATCCCCGA TGATATCTCT
GACGATCTGG CCTCTATCTT TGACCCATTT GGCAATGCGG TTCACACTGC GCTCTCTTTC
GATCTTGTGG GTGAAGATGT ATTGATCACA GGTGCAGGTC CTATCGGCAT TATGGCCGCA
GCTGTCTGTC GTCATGTTGG TGCACGACAT GTGGTCATCA CCGACGTTAA CGAGTATCGT
CTTGAGTTAG CCCAAAAGAT GGGAGCAACA CGCGCCGTCA ATGTGGCTAA AGAGGATCTT
AAAGATGTCA TGAGCGAACT TGGCATGACT GAGGGCTTCG ATGTCGGTCT TGAGATGTCT
GGTGTGCCTT CTGCTTTCCA CTCAATGCTT GATACCATGA ACCATGGCGG TAAAGTTGCC
ATGTTAGGTA TTCCTGGTGG CGATATGGCT ATCGATTGGA GTAAAGTTAT CTTCAAAGGG
CTCATCATCA AAGGGATCTA CGGTCGTGAG ATGTTTGAAA CCTGGTACAA GATGGCGAGC
TTAATCCAGT CAGGGCTAGA TATCTCACCT ATTATTACCC ACCATTACAA GGTTGATGAG
TTCCAACAGG GCTTCGATGC CATGCGTTCG GGTCAATCGG GTAAGGTTAT CCTAAACTGG
GATTAA
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| Protein sequence | MKALSKLKPE EGIWMVDAPK PEMGHNDLLI KIRKTAICGT DVHIYNWDEW SQNTIPVPMV
VGHEYVGEVV DIGQEVRGFS IGDRVSGEGH ITCGHCRNCR AGRTHLCRNT SGVGVNRDGA
FAEYLVIPAF NAFKIPDDIS DDLASIFDPF GNAVHTALSF DLVGEDVLIT GAGPIGIMAA
AVCRHVGARH VVITDVNEYR LELAQKMGAT RAVNVAKEDL KDVMSELGMT EGFDVGLEMS
GVPSAFHSML DTMNHGGKVA MLGIPGGDMA IDWSKVIFKG LIIKGIYGRE MFETWYKMAS
LIQSGLDISP IITHHYKVDE FQQGFDAMRS GQSGKVILNW D
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