| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0062 |
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| Symbol | |
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| ID | 6114284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 76751 |
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| End bp | 77587 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641631542 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001758458 |
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| Protein GI | 170724432 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.015636 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000313005 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATAGAGA TAGGCAGGTT ACCTAATGAA AGAGCAGCTC AAGCTCTGGT CGATTATCTC
AAAGGTGAGA ACGTCGACTG CAAAGTCATC CCCTCTGAAC AAGGTGTCAT TATAGCCGTA
GTTCATGATC ACGATAGTCT GAAAGCCACC ATGGAGTTTC AGCAATTCGT GCTAAACCCC
CACGACGATA AATATCTACA AGCCTCATGG GATAACGGTG ATACACGCTT AAAAATGGAT
TATGGCGCGC CATCTCTGCA GTTGTTAACT CAGTTTATCT CAGGCGCTGG TCCTCTTACG
CTGGCAGTCT TCTTTATCTG CATCTTAGTG TTTGCAGGCT TCAACTTAGG TTTTGCCAAC
CCTATTTACG AATACCTCTC CTTCTTCGGT GCGGCTCCCG GCCCAGATCT CAGTCAATTT
TGGCGGATTT TCACGCCGAT CTTGCTTCAC TTCTCCGCCC TGCACATCAT CTTTAATCTA
CTCTGGTGGT GGTATCTAGG AGGAAAAATT GAGAACAAAC TTGGGGTTGC TCCGCTGTTT
ATCTTACTGC TAGTGGCTGG AACCGTACCT AACCTCGTCC AGTACTACGT TAGCGGCCCT
AACTTTGGTG GATTATCTGG CGTGGTGTAT GCCGTGGTCG GTTATACCTG GATCATGGGA
GTAAAACGCC CAGAACTTGG TATAGGCCTG CCTCCAGCCT ATATTGGCTT TATGCTGTTA
TGGCTCGTTT TTGGCTTTAC CGATCTATTC GGCCTCTCGA TCGCTAATTG TGCAAATGTA
GGCGGGCTTG TAGTTGGTCT ACTGCAAGGA TTTATCGACA GTAAAAGACG AGTTTAA
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| Protein sequence | MIEIGRLPNE RAAQALVDYL KGENVDCKVI PSEQGVIIAV VHDHDSLKAT MEFQQFVLNP
HDDKYLQASW DNGDTRLKMD YGAPSLQLLT QFISGAGPLT LAVFFICILV FAGFNLGFAN
PIYEYLSFFG AAPGPDLSQF WRIFTPILLH FSALHIIFNL LWWWYLGGKI ENKLGVAPLF
ILLLVAGTVP NLVQYYVSGP NFGGLSGVVY AVVGYTWIMG VKRPELGIGL PPAYIGFMLL
WLVFGFTDLF GLSIANCANV GGLVVGLLQG FIDSKRRV
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