Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0060 |
Symbol | |
ID | 6114282 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 72902 |
End bp | 75739 |
Gene Length | 2838 bp |
Protein Length | 945 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641631540 |
Product | DNA polymerase I |
Protein accession | YP_001758456 |
Protein GI | 170724430 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0959551 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000000934143 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCCGAAA ACTCCCTTCT ATGGCATGCT AGCGCCACTA TCGAAAACAG ATCTCGAAAC CAAAGCCGAA TACTTATTAT GCCTAAAATT GCTGAAAACC CTTTAGTTCT TGTGGATGGT TCTTCATACC TCTACCGAGC CTATTACGCA CCACCACATC TAACAAATTC AAAAGGGGAA GCGACTGGAG CAGTCTATGG CGTGATCAAC ATGCTACGCA GCTTACTTAA TCAATATAAA CCAAGTCAGA TGGCTGTGGT ATTCGATGCA AAAGGTAAAA CTTTCCGTAA TGATATGTAC GAAGAGTACA AGGCACAGCG TCCACCTATG CCAGATGATC TTCGCACCCA AATAGAGCCA CTGCATAATA TTATTCGCGC ATTAGGTTTA CCTCTTGTCT GTATTCCCGG CGTCGAAGCC GACGATGTGA TAGGCACGAT TGCGACACAA GCCAGCAAAG AGGGACGCGC CGTCCTAATC AGCACTGGTG ATAAGGATAT GGCTCAGCTG GTCGATGATA ATGTCACACT TATCAACACC ATGACCAATA CCATTATGGG ACCGGAAGAG GTGACTGAAA AGTTTGGTGT AGGGCCTGAG TTGATTATTG ATCTGCTAGC ACTGCAGGGC GATAAGGCAG ATAACATTCC AGGTCTTCCA GGTGTTGGTG AGAAAACAGC AGTGGCTATG CTAACAGGGG CGGGTAGCGT CGAGCAGATC TTAGCGGCTC CAGAAAAGAT ACCGGCTTTA GGCTTTAGAG GTTCTAAAAC CATGCCTGCC AAACTCGCCG AACATGGTGA GATGCTTAAG TTATCCTACG AGTTAGCGAC CATTAAACTC GATGTAGAGA TGGAGCAAGA CTGGAAAGAG TTAGTCATTG CACCAGCGAA TAAAGATGAT CTGGTGAAAT ACTATGGCGA GATGGAATTT AAGCGCTGGT TAGCCGAAGT CTTAGACAAT AAAGGCAGCT CAGCTCAAAG CTCAGATAAC AGTGCAGATG AAGAGGAGGT TGTTCCACAG GCTATCGACG CCGAATATGA GACAATTCTG ACTCATGAAG CTTTGGACAA ATGGATCGAA CAACTCACCA AAGCAGATCT CATTGCTATC GACACTGAGA CCACCAGCCT AGATTACATG ACAGCTAAGC TTGTGGGGAT CTCGTTTGCT GTAGAGGTTG GCAAAGCCGC TTATCTCCCA TTAGCACACG ATTACCTCGA TGCTCCTGAG CAACTGGATT TCGATGAGGC TATCGCCAAG CTTAAGCCTC TACTTGAAGA TCCCAAGCTT AAAAAAGTGG GACAAAACCT TAAATATGAC ATCAGCATCT TTGCCAATGT CGGCATCAAG CTACAAGGTG TTGCCTTCGA TACCATGCTC GAGTCCTACG TATTTAACTC GGTAGCTTCA AAGCACAATA TGGATGATCT GGCACTTAAA TACCTAGGTC ATAAAAATAT TAGTTTCGAA GAGATCGCCG GGAAAGGCGC TAAGCAGCTC ACCTTTAATC AGATCGATCT CGAAACAGCT GCCCCTTATG CCGCAGAAGA TGCCGACATC ACCCTTAGAT TACATCAACA TCTATGGGCA AGATTAGAGA AAGAACCAAA GCTTGCTTCA GTATTTACTG ATATCGAACT GCCACTGGTT CAAGTACTCT CAAAGATCGA ACGCCAAGGC GTACTTATCG ACAGCATGAT GCTAGGTCAG CAAAGCCAAG AGATCGCTAT CTCTATCGAT AAGCTAGAGC AAGATGCTTT CGAAATAGCT GGAGAAACCT TCAATCTAAG TTCACCTAAG CAGTTACAAG CACTCTTTTT CGAGAAGCTT GGCTACCCAG TGATTAAGAA GACCCCCAAG GGAGCCCCTT CAACCGCCGA AGAGGTGTTG GTCGAGCTTG CTCTAGATTA CCCATTGCCT AAGATAATCT TGCAACACAG AAGCTTAGCG AAGCTTAAAA GCACTTACAC TGACAAGCTT CCCCTAATGG TTAATGCTCA ATCTGGCCGA GTACACACCA GTTATCACCA AGCTAATGCC GCAACGGGTC GTTTATCTTC CAGCGAACCT AATCTGCAAA ATATCCCGAT CCGAACCGAA GAGGGACGCC GCATACGCCA TGCCTTTATT GCTCAAGAGG GTAAAAAAGT GCTGGCAGCC GATTACTCTC AAATCGAGCT ACGGATCATG GCTCATCTGT CACAAGACAA GGGCTTACTC ACCGCTTTTG CTGAAGGTAA AGATATTCAT AAAGCCACGG CAGCAGAGGT ATTTGGTGTT GATTTCAGTG AGGTCACCAC AGAGCAGCGC CGCCGTGCTA AGGCCGTTAA CTTCGGCTTA ATCTACGGCA TGTCTGCATT TGGTCTTGCT AGGCAGCTTG ATATTCCTCG CGGTGAAGCG CAAAAGTATA TCGACACTTA CTTCGATCGC TACCCAGGTG TGCTCAAGTA TATGGAAGAC ACCAGAGCAG AAGCCGCTGA TCTTGGTTAC GTCTCGACTC TTTATGGCCG CAGACTCTAT CTACCTGCGA TTAAAGACAG AAACGCCATG CGCAGACAAG CCGCCGAGCG CGCCGCAATT AACGCGCCTA TGCAAGGAAC AGCCGCTGAT ATTATTAAGA AGGCAATGAT CAATATTGCT AGCTGGATCG AATCTGAGAC CCATGGTGAG ATCACTATGA TCATGCAGGT ACACGATGAA TTGGTATTTG AGGTCGATAG TGATAAAGCT GAAGCATTAA AAGAGCAGAT ATGTAAGATG ATGGCCGATG CAGTTAGCTT AGATGTCGAA CTACTCGCCG AAGGCGGAAT AGGCGACAAC TGGGAGCAAG CTCACTAA
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Protein sequence | MAENSLLWHA SATIENRSRN QSRILIMPKI AENPLVLVDG SSYLYRAYYA PPHLTNSKGE ATGAVYGVIN MLRSLLNQYK PSQMAVVFDA KGKTFRNDMY EEYKAQRPPM PDDLRTQIEP LHNIIRALGL PLVCIPGVEA DDVIGTIATQ ASKEGRAVLI STGDKDMAQL VDDNVTLINT MTNTIMGPEE VTEKFGVGPE LIIDLLALQG DKADNIPGLP GVGEKTAVAM LTGAGSVEQI LAAPEKIPAL GFRGSKTMPA KLAEHGEMLK LSYELATIKL DVEMEQDWKE LVIAPANKDD LVKYYGEMEF KRWLAEVLDN KGSSAQSSDN SADEEEVVPQ AIDAEYETIL THEALDKWIE QLTKADLIAI DTETTSLDYM TAKLVGISFA VEVGKAAYLP LAHDYLDAPE QLDFDEAIAK LKPLLEDPKL KKVGQNLKYD ISIFANVGIK LQGVAFDTML ESYVFNSVAS KHNMDDLALK YLGHKNISFE EIAGKGAKQL TFNQIDLETA APYAAEDADI TLRLHQHLWA RLEKEPKLAS VFTDIELPLV QVLSKIERQG VLIDSMMLGQ QSQEIAISID KLEQDAFEIA GETFNLSSPK QLQALFFEKL GYPVIKKTPK GAPSTAEEVL VELALDYPLP KIILQHRSLA KLKSTYTDKL PLMVNAQSGR VHTSYHQANA ATGRLSSSEP NLQNIPIRTE EGRRIRHAFI AQEGKKVLAA DYSQIELRIM AHLSQDKGLL TAFAEGKDIH KATAAEVFGV DFSEVTTEQR RRAKAVNFGL IYGMSAFGLA RQLDIPRGEA QKYIDTYFDR YPGVLKYMED TRAEAADLGY VSTLYGRRLY LPAIKDRNAM RRQAAERAAI NAPMQGTAAD IIKKAMINIA SWIESETHGE ITMIMQVHDE LVFEVDSDKA EALKEQICKM MADAVSLDVE LLAEGGIGDN WEQAH
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