Gene Swoo_0053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0053 
Symbol 
ID6114274 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp64613 
End bp65953 
Gene Length1341 bp 
Protein Length446 aa 
Translation table11 
GC content44% 
IMG OID641631532 
Productcoproporphyrinogen III oxidase 
Protein accessionYP_001758449 
Protein GI170724423 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 
TIGRFAM ID[TIGR00538] oxygen-independent coproporphyrinogen III oxidase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.59946 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.060899 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGAAA AATACAATTA CAGCGGTCCC CGTTATACGT CATACCCTAC GGCATTGGAA 
TTTGATGACT CTTTTACTGA AGAGAAGCTA CTCACTTCCA TTGCAAACAG CAAAAGCGAT
AAGTTATCTC TTTATCTGCA TATCCCTTTC TGCGCTAAGC TTTGCTACTA CTGCGGCTGT
AATAAGGTGA TCACTCGTCA CCAACATAAA GCCGATCAAT ATATCGAATA CCTAGCTGCT
GAAATCGTTA AACGTGCTCC GCTGTTTAAG AACTACCTTG TAACTCAAAT TCACTGGGGT
GGCGGTACAC CGACCTTTTT AAGCCCAGAT CAGATCCTAA AGCTCTCTTC ACTTATCAAA
GAGCACTTCA ATGTCGCTGA TAAAGGCGAA TACTCTATCG AAGTGGATCC ACGTGAGATT
GAGCTCTCTA TGCTTGATAC GCTTAAAGAA GCGGGCTTTA ACCGCATCTC TATCGGTGTA
CAAGACTTCA ATAAAAAGGT TCAAATCGCG GTAAACCGTG AGCAAGATGA GCAGTTCATC
TTTGACCTGA TGGCCAGAGC AAAAGAGCTA GGCTTTGTTT CAACAAACAT TGACCTTATC
TATGGCCTGC CACACCAGAC ACCTGAGACT TTCGCAGAGA CAATGCAGCG CGTGCTAGAT
CTCGACCCAG ATCGTTTATC TGTCTTTAAC TACGCACATC TGCCTGCCCG TTTTGCAGCT
CAGCGTAAGA TTAAAGATGA AGATCTAGCA TCACCTCAGC AGAAGCTAGA TATGCTCCAC
CAGACTATCG AAACCTTAAC GGGTGCAGGG TACCAATACA TAGGTATGGA TCACTTTGCT
AAGCCAGATG ATGAACTGTC GATTCTGCAA AATGAAGGTC GTCTGCACAG AAACTTCCAA
GGTTATACCA CTCAAGAGGA GTGCGACCTA TTGGGACTGG GTGTATCATC AATCAGCCAG
ATCGGTGACT GTTACGCTCA AAACCAAAAA GACATTCGCC CTTACTATGA GTCAGTAGAT
AAGTTAGGTC ATGCATTGTG GAAAGGCTGT AGCTTAAACC GTGACGATGA GATCCGTCGT
GTGGTGATTA AGCAGCTTAT CTGTCATTTT GACCTTGATA TGGCTCAAAT CGATGAGAAA
CTAGGTATTA ACTTTGAAGA GTACTTCAGT GAAGACCTTA AACTACTGCA AACCTTTATC
GATGATAAGC TAGTCGACAT CACAGACAGA AAGATCACCA TCAGCCCTAC TGGCCGTTTG
TTGATCCGTA ATATCTGTAT CTGTTTTGAT GTTTACTACC GTGAAAAGGC AAGACAGCAG
CAATTCTCTC GCGTTATTTA A
 
Protein sequence
MIEKYNYSGP RYTSYPTALE FDDSFTEEKL LTSIANSKSD KLSLYLHIPF CAKLCYYCGC 
NKVITRHQHK ADQYIEYLAA EIVKRAPLFK NYLVTQIHWG GGTPTFLSPD QILKLSSLIK
EHFNVADKGE YSIEVDPREI ELSMLDTLKE AGFNRISIGV QDFNKKVQIA VNREQDEQFI
FDLMARAKEL GFVSTNIDLI YGLPHQTPET FAETMQRVLD LDPDRLSVFN YAHLPARFAA
QRKIKDEDLA SPQQKLDMLH QTIETLTGAG YQYIGMDHFA KPDDELSILQ NEGRLHRNFQ
GYTTQEECDL LGLGVSSISQ IGDCYAQNQK DIRPYYESVD KLGHALWKGC SLNRDDEIRR
VVIKQLICHF DLDMAQIDEK LGINFEEYFS EDLKLLQTFI DDKLVDITDR KITISPTGRL
LIRNICICFD VYYREKARQQ QFSRVI